The rise of data‐driven microscopy powered by machine learning
Morgado, Leonor, Gómez‐de‐Mariscal, Estibaliz, Heil, Hannah S., Henriques, Ricardo
Published in Journal of microscopy (Oxford) (01.08.2024)
Published in Journal of microscopy (Oxford) (01.08.2024)
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Journal Article
The Cell Tracking Challenge: 10 years of objective benchmarking
Maška, Martin, Ulman, Vladimír, Delgado-Rodriguez, Pablo, Gómez-de-Mariscal, Estibaliz, Nečasová, Tereza, Guerrero Peña, Fidel A., Ren, Tsang Ing, Meyerowitz, Elliot M., Scherr, Tim, Löffler, Katharina, Mikut, Ralf, Guo, Tianqi, Wang, Yin, Allebach, Jan P., Bao, Rina, Al-Shakarji, Noor M., Rahmon, Gani, Toubal, Imad Eddine, Palaniappan, Kannappan, Lux, Filip, Matula, Petr, Sugawara, Ko, Magnusson, Klas E. G., Aho, Layton, Cohen, Andrew R., Arbelle, Assaf, Ben-Haim, Tal, Raviv, Tammy Riklin, Isensee, Fabian, Jäger, Paul F., Maier-Hein, Klaus H., Zhu, Yanming, Ederra, Cristina, Urbiola, Ainhoa, Meijering, Erik, Cunha, Alexandre, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solórzano, Carlos
Published in Nature methods (01.07.2023)
Published in Nature methods (01.07.2023)
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Journal Article
Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets
Gómez-de-Mariscal, Estibaliz, Guerrero, Vanesa, Sneider, Alexandra, Jayatilaka, Hasini, Phillip, Jude M., Wirtz, Denis, Muñoz-Barrutia, Arrate
Published in Scientific reports (22.10.2021)
Published in Scientific reports (22.10.2021)
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Journal Article
CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data
Gómez-de-Mariscal, Estibaliz, Grobe, Hanna, Pylvänäinen, Joanna W, Xénard, Laura, Henriques, Ricardo, Tinevez, Jean-Yves, Jacquemet, Guillaume
Published in PLoS biology (08.08.2024)
Published in PLoS biology (08.08.2024)
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Journal Article
DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches
Spahn, Christoph, Gómez-de-Mariscal, Estibaliz, Laine, Romain F., Pereira, Pedro M., von Chamier, Lucas, Conduit, Mia, Pinho, Mariana G., Jacquemet, Guillaume, Holden, Séamus, Heilemann, Mike, Henriques, Ricardo
Published in Communications biology (09.07.2022)
Published in Communications biology (09.07.2022)
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Journal Article
This Microtubule Does Not Exist: Super-Resolution Microscopy Image Generation by a Diffusion Model
Saguy, Alon, Nahimov, Tav, Lehrman, Maia, Gómez-de-Mariscal, Estibaliz, Hidalgo-Cenalmor, Iván, Alalouf, Onit, Balakrishnan, Ashwin, Heilemann, Mike, Henriques, Ricardo, Shechtman, Yoav
Published in Small methods (14.10.2024)
Published in Small methods (14.10.2024)
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Journal Article
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ
Gómez-de-Mariscal, Estibaliz, García-López-de-Haro, Carlos, Ouyang, Wei, Donati, Laurène, Lundberg, Emma, Unser, Michael, Muñoz-Barrutia, Arrate, Sage, Daniel
Published in Nature methods (01.10.2021)
Published in Nature methods (01.10.2021)
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Journal Article
Live-cell imaging in the deep learning era
Pylvänäinen, Joanna W., Gómez-de-Mariscal, Estibaliz, Henriques, Ricardo, Jacquemet, Guillaume
Published in Current opinion in cell biology (01.12.2023)
Published in Current opinion in cell biology (01.12.2023)
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Journal Article
Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images
Gómez-de-Mariscal, Estibaliz, Maška, Martin, Kotrbová, Anna, Pospíchalová, Vendula, Matula, Pavel, Muñoz-Barrutia, Arrate
Published in Scientific reports (13.09.2019)
Published in Scientific reports (13.09.2019)
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Journal Article
JDLL: a library to run deep learning models on Java bioimage informatics platforms
García López de Haro, Carlos, Dallongeville, Stéphane, Musset, Thomas, Gómez-de-Mariscal, Estibaliz, Sage, Daniel, Ouyang, Wei, Muñoz-Barrutia, Arrate, Tinevez, Jean-Yves, Olivo-Marin, Jean-Christophe
Published in Nature methods (01.01.2024)
Published in Nature methods (01.01.2024)
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Journal Article
DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible
Hidalgo-Cenalmor, Iván, Pylvänäinen, Joanna W., G. Ferreira, Mariana, Russell, Craig T., Saguy, Alon, Arganda-Carreras, Ignacio, Shechtman, Yoav, Jacquemet, Guillaume, Henriques, Ricardo, Gómez-de-Mariscal, Estibaliz
Published in Nature methods (01.06.2024)
Published in Nature methods (01.06.2024)
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Journal Article
Association of visual and quantitative heterogeneity of 18F-FDG PET images with treatment response in locally advanced rectal cancer: A feasibility study
Martin-Gonzalez, Paula, de Mariscal, Estibaliz Gomez, Martino, M Elena, Gordaliza, Pedro M, Peligros, Isabel, Carreras, Jose Luis, Calvo, Felipe A, Pascau, Javier, Desco, Manuel, Muñoz-Barrutia, Arrate
Published in PloS one (30.11.2020)
Published in PloS one (30.11.2020)
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Journal Article
MLL1 regulates cytokine-driven cell migration and metastasis
Nair, Praful R, Danilova, Ludmila, Gómez-de-Mariscal, Estibaliz, Kim, Dongjoo, Fan, Rong, Muñoz-Barrutia, Arrate, Fertig, Elana J, Wirtz, Denis
Published in Science advances (15.03.2024)
Published in Science advances (15.03.2024)
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Journal Article
Small extracellular vesicles promote stiffness-mediated metastasis
Sneider, Alexandra, Liu, Ying, Starich, Bartholomew, Du, Wenxuan, Nair, Praful R, Marar, Carolyn, Faqih, Najwa, Ciotti, Gabrielle E, Kim, Joo Ho, Krishnan, Sejal, Ibrahim, Salma, Igboko, Muna, Locke, Alexus, Lewis, Daniel M, Hong, Hanna, Karl, Michelle N, Vij, Raghav, Russo, Gabriella C, Gómez-de-Mariscal, Estibaliz, Habibi, Mehran, Muñoz-Barrutia, Arrate, Gu, Luo, Eisinger-Mathason, T S Karin, Wirtz, Denis
Published in Cancer research communications (09.05.2024)
Published in Cancer research communications (09.05.2024)
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Journal Article
Gut Analysis Toolbox: Automating quantitative analysis of enteric neurons
Sorensen, Luke, Humenick, Adam, Poon, Sabrina S B, Han, Myat Noe, Mahdavian, Narges S, Rowe, Matthew C, Hamnett, Ryan, Gómez-de-Mariscal, Estibaliz, Neckel, Peter H, Saito, Ayame, Mutunduwe, Keith, Glennan, Christie, Haase, Robert, McQuade, Rachel M, Foong, Jaime P P, Brookes, Simon J H, Kaltschmidt, Julia A, Muñoz-Barrutia, Arrate, King, Sebastian K, Veldhuis, Nicholas A, Carbone, Simona E, Poole, Daniel P, Rajasekhar, Pradeep
Published in Journal of cell science (15.10.2024)
Published in Journal of cell science (15.10.2024)
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Journal Article
Abstract 3608: MLL1 regulates cytokine-driven cell migration and metastasis
Nair, Praful R., Danilova, Ludmila, Gómez-de-Mariscal, Estibaliz, Kim, Dongjoo, Fan, Rong, Muñoz-Barrutia, Arrate, Fertig, Elana, Wirtz, Denis
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract B046: MLL1 regulates cytokine-driven cell migration and metastasis
Nair, Praful R., Danilova, Ludmila, Gómez-de-Mariscal, Estibaliz, Kim, Dongjoo, Fan, Rong, Muñoz-Barrutia, Arrate, Fertig, Elana, Wirtz, Denis
Published in Cancer research (Chicago, Ill.) (15.01.2023)
Published in Cancer research (Chicago, Ill.) (15.01.2023)
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Journal Article
The Rise of Data-Driven Microscopy powered by Machine Learning
Morgado, Leonor, Gómez-de-Mariscal, Estibaliz, Heil, Hannah S, Henriques, Ricardo
Published in arXiv.org (10.01.2024)
Published in arXiv.org (10.01.2024)
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Paper
Journal Article
Harnessing Artificial Intelligence To Reduce Phototoxicity in Live Imaging
Gómez-de-Mariscal, Estibaliz, Mario Del Rosario, Pylvänäinen, Joanna W, Jacquemet, Guillaume, Henriques, Ricardo
Published in arXiv.org (08.08.2023)
Published in arXiv.org (08.08.2023)
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Journal Article