Delta SARS-CoV‑2 s2m Structure, Dynamics, and Entropy: Consequences of the G15U Mutation
Makowski, Joseph A., Kensinger, Adam H., Cunningham, Caylee L., Frye, Caleb J., Shine, Morgan, Lackey, Patrick E., Mihailescu, Mihaela Rita, Evanseck, Jeffrey D.
Published in ACS Physical Chemistry Au (27.09.2023)
Published in ACS Physical Chemistry Au (27.09.2023)
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Protein-RNA interactions of FMRP and CCND1: Implications of regulation in neurogenesis
Palumbo, Rosalia, Cunningham, Caylee, Frye, Caleb J., Mihailescu, Mihaela-Rita
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Viral-host RNA-RNA interactions in SARS-CoV-2: Study of miR-34a-5p binding interactions within the genome 3'-untranslated region
Frye, Caleb J., Cunningham, Caylee, Kensinger, Adam H., Makowski, Joseph A., Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article
Delta variant versus ancestral SARS-CoV-2 s2m dynamics and relative entropy
Makowski, Joseph A., Kensinger, Adam H., Pellegrene, Kendy A., Cunningham, Caylee, Frye, Caleb J., Lackey, Patrick E., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Journal Article
Effect of the SARS-CoV-2 Delta-associated G15U mutation on the s2m element dimerization and its interactions with miR-1307-3p
Cunningham, Caylee L, Frye, Caleb J, Makowski, Joseph A, Kensinger, Adam H, Shine, Morgan, Milback, Ella J, Lackey, Patrick E, Evanseck, Jeffrey D, Mihailescu, Mihaela-Rita
Published in RNA (Cambridge) (01.11.2023)
Published in RNA (Cambridge) (01.11.2023)
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Bioinformatics analysis of the s2m mutations within the SARS‐CoV‐2 Omicron lineages
Frye, Caleb J., Shine, Morgan, Makowski, Joseph A., Kensinger, Adam H., Cunningham, Caylee L., Milback, Ella J., Evanseck, Jeffrey D., Lackey, Patrick E., Mihailescu, Mihaela Rita
Published in Journal of medical virology (01.01.2023)
Published in Journal of medical virology (01.01.2023)
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Journal Article
Structural and thermodynamic consequences of the G31U and U5C mutations in the SARS-CoV-2 s2m
Kensinger, Adam H., Makowski, Joseph A., Pellegrene, Kendy A., Cunningham, Caylee L., Frye, Caleb J., Lackey, Patrick E., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.
Published in Biophysical journal (10.02.2023)
Published in Biophysical journal (10.02.2023)
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Structural, Dynamical, and Entropic Differences between SARS-CoV and SARS-CoV‑2 s2m Elements Using Molecular Dynamics Simulations
Kensinger, Adam H., Makowski, Joseph A., Pellegrene, Kendy A., Imperatore, Joshua A., Cunningham, Caylee L., Frye, Caleb J., Lackey, Patrick E., Mihailescu, Mihaela Rita, Evanseck, Jeffrey D.
Published in ACS Physical Chemistry Au (25.01.2023)
Published in ACS Physical Chemistry Au (25.01.2023)
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Journal Article
Host microRNA interactions with the SARS-COV-2 viral genome 3′-untranslated region
Frye, Caleb J., Cunningham, Caylee, Mihailescu, Mihaela-Rita
Published in Biophysical journal (08.02.2024)
Published in Biophysical journal (08.02.2024)
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Journal Article
Conserved Elements in the 3'-UTR of SARS-CoV-2: Involvement in Genomic Dimerization and Interactions with Cellular Micrornas
Imperatore, Joshua A., Cunningham, Caylee L., Frye, Caleb J., Pellegrene, Kendy A., Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita
Published in Biophysical journal (12.02.2021)
Published in Biophysical journal (12.02.2021)
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Journal Article
Characterization of the S2M G15U mutation associated with the SARS-CoV-2 delta variant
Cunningham, Caylee L., Frye, Caleb J., Imperatore, Joshua A., Pellegrene, Kendy A., Kensinger, Adam H., Makowski, Joseph A., Shine, Morgan, Lackey, Patrick, Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Stem-loop II motif (s2m) structural and dynamical differences between SARS-CoV-2 and b.1.617.2 (Delta) variant
Makowski, Joseph A., Kensinger, Adam H., Pellegrene, Kendy A., Cunningham, Caylee, Frye, Caleb J., Shine, Morgan, Bojanac, Izayah, Lackey, Patrick, Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Structural and dynamical impact of the two-nucleotide difference in sequence between SARS-CoV and SARS-CoV-2 s2m using molecular dynamics
Kensinger, Adam H., Pellegrene, Kendy A., Makowski, Joseph A., Cunningham, Caylee L., Frye, Caleb J., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Viral-host RNA-RNA interactions in SARS-CoV-2: study of MIR-760-3p interactions with the genome 3'-untranslated region
Frye, Caleb J., Cunningham, Caylee L., Pellegrene, Kendy A., Kensinger, Adam H., Makowski, Joseph A., Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita
Published in Biophysical journal (11.02.2022)
Published in Biophysical journal (11.02.2022)
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Journal Article
Inside Front Cover Image, Volume 95, Number 1, January 2023
Frye, Caleb J., Shine, Morgan, Makowski, Joseph A., Kensinger, Adam H., Cunningham, Caylee L., Milback, Ella J., Evanseck, Jeffrey D., Lackey, Patrick E., Mihailescu, Mihaela Rita
Published in Journal of medical virology (01.01.2023)
Published in Journal of medical virology (01.01.2023)
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Journal Article
Effect of the SARS-CoV-2 Delta-associated G15U mutation on the s2m element dimerization and its interactions with miR-1307-3p
Cunningham, Caylee L, Frye, Caleb J, Makowski, Joseph A, Kensinger, Adam H, Shine, Morgan, Milback, Ella J, Lackey, Patrick E, Evanseck, Jeffrey D, Mihailescu, Mihaela-Rita
Published in bioRxiv : the preprint server for biology (10.02.2023)
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Published in bioRxiv : the preprint server for biology (10.02.2023)
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