Inferring Cellular Networks Using Probabilistic Graphical Models
Friedman, Nir
Published in Science (American Association for the Advancement of Science) (06.02.2004)
Published in Science (American Association for the Advancement of Science) (06.02.2004)
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Journal Article
EEG-Based Prediction of Cognitive Load in Intelligence Tests
Friedman, Nir, Fekete, Tomer, Gal, Kobi, Shriki, Oren
Published in Frontiers in human neuroscience (11.06.2019)
Published in Frontiers in human neuroscience (11.06.2019)
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Journal Article
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
Hsieh, Tsung-Han S., Weiner, Assaf, Lajoie, Bryan, Dekker, Job, Friedman, Nir, Rando, Oliver J.
Published in Cell (02.07.2015)
Published in Cell (02.07.2015)
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Journal Article
Chromatin state dynamics during blood formation
Lara-Astiaso, David, Weiner, Assaf, Lorenzo-Vivas, Erika, Zaretsky, Irina, Jaitin, Diego Adhemar, David, Eyal, Keren-Shaul, Hadas, Mildner, Alexander, Winter, Deborah, Jung, Steffen, Friedman, Nir, Amit, Ido
Published in Science (American Association for the Advancement of Science) (22.08.2014)
Published in Science (American Association for the Advancement of Science) (22.08.2014)
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Journal Article
High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling
Brar, Gloria A., Yassour, Moran, Friedman, Nir, Regev, Aviv, Ingolia, Nicholas T., Weissman, Jonathan S.
Published in Science (American Association for the Advancement of Science) (03.02.2012)
Published in Science (American Association for the Advancement of Science) (03.02.2012)
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Journal Article
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Levin, Joshua Z, Regev, Aviv, Yassour, Moran, Adiconis, Xian, Nusbaum, Chad, Thompson, Dawn Anne, Friedman, Nir, Gnirke, Andreas
Published in Nature methods (01.09.2010)
Published in Nature methods (01.09.2010)
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Journal Article
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
Weiner, Assaf, Hughes, Amanda, Yassour, Moran, Rando, Oliver J, Friedman, Nir
Published in Genome research (01.01.2010)
Published in Genome research (01.01.2010)
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Journal Article
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Haas, Brian J, Papanicolaou, Alexie, Yassour, Moran, Grabherr, Manfred, Blood, Philip D, Bowden, Joshua, Couger, Matthew Brian, Eccles, David, Li, Bo, Lieber, Matthias, MacManes, Matthew D, Ott, Michael, Orvis, Joshua, Pochet, Nathalie, Strozzi, Francesco, Weeks, Nathan, Westerman, Rick, William, Thomas, Dewey, Colin N, Henschel, Robert, LeDuc, Richard D, Friedman, Nir, Regev, Aviv
Published in Nature protocols (01.08.2013)
Published in Nature protocols (01.08.2013)
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Journal Article
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Friedman, Nir, Regev, Aviv, Grabherr, Manfred G, Haas, Brian J, Yassour, Moran, Levin, Joshua Z, Thompson, Dawn A, Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W, Nusbaum, Chad, Lindblad-Toh, Kerstin
Published in Nature biotechnology (01.07.2011)
Published in Nature biotechnology (01.07.2011)
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Journal Article
Universal critical dynamics in high resolution neuronal avalanche data
Friedman, Nir, Ito, Shinya, Brinkman, Braden A W, Shimono, Masanori, DeVille, R E Lee, Dahmen, Karin A, Beggs, John M, Butler, Thomas C
Published in Physical review letters (16.05.2012)
Published in Physical review letters (16.05.2012)
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Journal Article
High-Resolution Chromatin Dynamics during a Yeast Stress Response
Weiner, Assaf, Hsieh, Tsung-Han S., Appleboim, Alon, Chen, Hsiuyi V., Rahat, Ayelet, Amit, Ido, Rando, Oliver J., Friedman, Nir
Published in Molecular cell (16.04.2015)
Published in Molecular cell (16.04.2015)
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Journal Article
Paternally Induced Transgenerational Environmental Reprogramming of Metabolic Gene Expression in Mammals
Carone, Benjamin R., Fauquier, Lucas, Habib, Naomi, Shea, Jeremy M., Hart, Caroline E., Li, Ruowang, Bock, Christoph, Li, Chengjian, Gu, Hongcang, Zamore, Phillip D., Meissner, Alexander, Weng, Zhiping, Hofmann, Hans A., Friedman, Nir, Rando, Oliver J.
Published in Cell (23.12.2010)
Published in Cell (23.12.2010)
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Journal Article
High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies
Rabani, Michal, Raychowdhury, Raktima, Jovanovic, Marko, Rooney, Michael, Stumpo, Deborah J., Pauli, Andrea, Hacohen, Nir, Schier, Alexander F., Blackshear, Perry J., Friedman, Nir, Amit, Ido, Regev, Aviv
Published in Cell (18.12.2014)
Published in Cell (18.12.2014)
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Journal Article
Statistics of dislocation slip avalanches in nanosized single crystals show tuned critical behavior predicted by a simple mean field model
Friedman, Nir, Jennings, Andrew T, Tsekenis, Georgios, Kim, Ju-Young, Tao, Molei, Uhl, Jonathan T, Greer, Julia R, Dahmen, Karin A
Published in Physical review letters (30.08.2012)
Published in Physical review letters (30.08.2012)
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Journal Article