Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features
Bakas, Spyridon, Akbari, Hamed, Sotiras, Aristeidis, Bilello, Michel, Rozycki, Martin, Kirby, Justin S, Freymann, John B, Farahani, Keyvan, Davatzikos, Christos
Published in Scientific data (05.09.2017)
Published in Scientific data (05.09.2017)
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Journal Article
The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository
Clark, Kenneth, Vendt, Bruce, Smith, Kirk, Freymann, John, Kirby, Justin, Koppel, Paul, Moore, Stephen, Phillips, Stanley, Maffitt, David, Pringle, Michael, Tarbox, Lawrence, Prior, Fred
Published in Journal of digital imaging (01.12.2013)
Published in Journal of digital imaging (01.12.2013)
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MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set
Gutman, David A, Cooper, Lee A D, Hwang, Scott N, Holder, Chad A, Gao, Jingjing, Aurora, Tarun D, Dunn, Jr, William D, Scarpace, Lisa, Mikkelsen, Tom, Jain, Rajan, Wintermark, Max, Jilwan, Manal, Raghavan, Prashant, Huang, Erich, Clifford, Robert J, Mongkolwat, Pattanasak, Kleper, Vladimir, Freymann, John, Kirby, Justin, Zinn, Pascal O, Moreno, Carlos S, Jaffe, Carl, Colen, Rivka, Rubin, Daniel L, Saltz, Joel, Flanders, Adam, Brat, Daniel J
Published in Radiology (01.05.2013)
Published in Radiology (01.05.2013)
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Integration of proteomics with CT-based qualitative and radiomic features in high-grade serous ovarian cancer patients: an exploratory analysis
Beer, Lucian, Sahin, Hilal, Bateman, Nicholas W., Blazic, Ivana, Vargas, Hebert Alberto, Veeraraghavan, Harini, Kirby, Justin, Fevrier-Sullivan, Brenda, Freymann, John B., Jaffe, C. Carl, Brenton, James, Miccó, Maura, Nougaret, Stephanie, Darcy, Kathleen M., Maxwell, G. Larry, Conrads, Thomas P., Huang, Erich, Sala, Evis
Published in European radiology (01.08.2020)
Published in European radiology (01.08.2020)
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Using computer‐extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage
Burnside, Elizabeth S., Drukker, Karen, Li, Hui, Bonaccio, Ermelinda, Zuley, Margarita, Ganott, Marie, Net, Jose M., Sutton, Elizabeth J., Brandt, Kathleen R., Whitman, Gary J., Conzen, Suzanne D., Lan, Li, Ji, Yuan, Zhu, Yitan, Jaffe, Carl C., Huang, Erich P., Freymann, John B., Kirby, Justin S., Morris, Elizabeth A., Giger, Maryellen L.
Published in Cancer (01.03.2016)
Published in Cancer (01.03.2016)
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Journal Article
De-identification of Medical Images with Retention of Scientific Research Value
Moore, Stephen M, Maffitt, David R, Smith, Kirk E, Kirby, Justin S, Clark, Kenneth W, Freymann, John B, Vendt, Bruce A, Tarbox, Lawrence R, Prior, Fred W
Published in Radiographics (01.05.2015)
Published in Radiographics (01.05.2015)
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From Discovery to Practice and Survivorship: Building a National Real‐World Data Learning Healthcare Framework for Military and Veteran Cancer Patients
Lee, Jerry S. H., Darcy, Kathleen M., Hu, Hai, Casablanca, Yovanni, Conrads, Thomas P., Dalgard, Clifton L., Freymann, John B., Hanlon, Sean E., Huang, Grant D., Kvecher, Leonid, Maxwell, George L., Meng, Frank, Moncur, Joel T., Turner, Clesson, Wells, Justin M., Wilkerson, Matthew D., Zhu, Kangmin, Ramoni, Rachel B., Shriver, Craig D.
Published in Clinical pharmacology and therapeutics (01.07.2019)
Published in Clinical pharmacology and therapeutics (01.07.2019)
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Journal Article
Deep learning-based segmentation of multisite disease in ovarian cancer
Buddenkotte, Thomas, Rundo, Leonardo, Woitek, Ramona, Escudero Sanchez, Lorena, Beer, Lucian, Crispin-Ortuzar, Mireia, Etmann, Christian, Mukherjee, Subhadip, Bura, Vlad, McCague, Cathal, Sahin, Hilal, Pintican, Roxana, Zerunian, Marta, Allajbeu, Iris, Singh, Naveena, Sahdev, Anju, Havrilesky, Laura, Cohn, David E., Bateman, Nicholas W., Conrads, Thomas P., Darcy, Kathleen M., Maxwell, G. Larry, Freymann, John B., Öktem, Ozan, Brenton, James D., Sala, Evis, Schönlieb, Carola-Bibiane
Published in European radiology experimental (07.12.2023)
Published in European radiology experimental (07.12.2023)
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Image Data Sharing for Biomedical Research—Meeting HIPAA Requirements for De-identification
Freymann, John B., Kirby, Justin S., Perry, John H., Clunie, David A., Jaffe, C. Carl
Published in Journal of digital imaging (01.02.2012)
Published in Journal of digital imaging (01.02.2012)
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Journal Article
Design and Implementation of the Pre-Clinical DICOM Standard in Multi-Cohort Murine Studies
Kalen, Joseph D, Clunie, David A, Liu, Yanling, Tatum, James L, Jacobs, Paula M, Kirby, Justin, Freymann, John B, Wagner, Ulrike, Smith, Kirk E, Suloway, Christian, Doroshow, James H
Published in Tomography (Ann Arbor) (01.03.2021)
Published in Tomography (Ann Arbor) (01.03.2021)
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Journal Article
Imaging genomic mapping of an invasive MRI phenotype predicts patient outcome and metabolic dysfunction: a TCGA glioma phenotype research group project
Colen, Rivka R, Vangel, Mark, Wang, Jixin, Gutman, David A, Hwang, Scott N, Wintermark, Max, Jain, Rajan, Jilwan-Nicolas, Manal, Chen, James Y, Raghavan, Prashant, Holder, Chad A, Rubin, Daniel, Huang, Eric, Kirby, Justin, Freymann, John, Jaffe, Carl C, Flanders, Adam, Zinn, Pascal O
Published in BMC medical genomics (02.06.2014)
Published in BMC medical genomics (02.06.2014)
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Journal Article
Matched computed tomography segmentation and demographic data for oropharyngeal cancer radiomics challenges
Elhalawani, Hesham, Mohamed, Abdallah S.R., White, Aubrey L., Zafereo, James, Wong, Andrew J., Berends, Joel E., AboHashem, Shady, Williams, Bowman, Aymard, Jeremy M., Kanwar, Aasheesh, Perni, Subha, Rock, Crosby D., Cooksey, Luke, Campbell, Shauna, Ding, Yao, Lai, Stephen Y., Marai, Elisabeta G., Vock, David, Canahuate, Guadalupe M., Freymann, John, Farahani, Keyvan, Kalpathy-Cramer, Jayashree, Fuller, Clifton D.
Published in Scientific data (04.07.2017)
Published in Scientific data (04.07.2017)
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The public cancer radiology imaging collections of The Cancer Imaging Archive
Prior, Fred, Smith, Kirk, Sharma, Ashish, Kirby, Justin, Tarbox, Lawrence, Clark, Ken, Bennett, William, Nolan, Tracy, Freymann, John
Published in Scientific data (19.09.2017)
Published in Scientific data (19.09.2017)
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Journal Article
Informatics methods to enable sharing of quantitative imaging research data
Levy, Mia A, Freymann, John B, Kirby, Justin S, Fedorov, Andriy, Fennessy, Fiona M, Eschrich, Steven A, Berglund, Anders E, Fenstermacher, David A, Tan, Yongqiang, Guo, Xiaotao, Casavant, Thomas L, Brown, Bartley J, Braun, Terry A, Dekker, Andre, Roelofs, Erik, Mountz, James M, Boada, Fernando, Laymon, Charles, Oborski, Matt, Rubin, Daniel L
Published in Magnetic resonance imaging (01.11.2012)
Published in Magnetic resonance imaging (01.11.2012)
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Journal Article
Author Correction: Imaging and clinical data archive for head and neck squamous cell carcinoma patients treated with radiotherapy
Grossberg, Aaron J, Mohamed, Abdallah S R, Elhalawani, Hesham, Bennett, William C, Smith, Kirk E, Nolan, Tracy S, Williams, Bowman, Chamchod, Sasikarn, Heukelom, Jolien, Kantor, Michael E, Browne, Theodora, Hutcheson, Katherine A, Gunn, G Brandon, Garden, Adam S, Morrison, William H, Frank, Steven J, Rosenthal, David I, Freymann, John B, Fuller, Clifton D
Published in Scientific data (27.11.2018)
Published in Scientific data (27.11.2018)
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Journal Article
Imaging and clinical data archive for head and neck squamous cell carcinoma patients treated with radiotherapy
Grossberg, Aaron J, Mohamed, Abdallah S R, Elhalawani, Hesham, Bennett, William C, Smith, Kirk E, Nolan, Tracy S, Williams, Bowman, Chamchod, Sasikarn, Heukelom, Jolien, Kantor, Michael E, Browne, Theodora, Hutcheson, Katherine A, Gunn, G Brandon, Garden, Adam S, Morrison, William H, Frank, Steven J, Rosenthal, David I, Freymann, John B, Fuller, Clifton D
Published in Scientific data (04.09.2018)
Published in Scientific data (04.09.2018)
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Journal Article
Outcome prediction in patients with glioblastoma by using imaging, clinical, and genomic biomarkers: focus on the nonenhancing component of the tumor
Jain, Rajan, Poisson, Laila M, Gutman, David, Scarpace, Lisa, Hwang, Scott N, Holder, Chad A, Wintermark, Max, Rao, Arvind, Colen, Rivka R, Kirby, Justin, Freymann, John, Jaffe, C Carl, Mikkelsen, Tom, Flanders, Adam
Published in Radiology (01.08.2014)
Published in Radiology (01.08.2014)
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Journal Article
Genomic mapping and survival prediction in glioblastoma: molecular subclassification strengthened by hemodynamic imaging biomarkers
Jain, Rajan, Poisson, Laila, Narang, Jayant, Gutman, David, Scarpace, Lisa, Hwang, Scott N, Holder, Chad, Wintermark, Max, Colen, Rivka R, Kirby, Justin, Freymann, John, Brat, Daniel J, Jaffe, Carl, Mikkelsen, Tom
Published in Radiology (01.04.2013)
Published in Radiology (01.04.2013)
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Journal Article
The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans
Armato, 3rd, Samuel G, McLennan, Geoffrey, Bidaut, Luc, McNitt-Gray, Michael F, Meyer, Charles R, Reeves, Anthony P, Zhao, Binsheng, Aberle, Denise R, Henschke, Claudia I, Hoffman, Eric A, Kazerooni, Ella A, MacMahon, Heber, Van Beeke, Edwin J R, Yankelevitz, David, Biancardi, Alberto M, Bland, Peyton H, Brown, Matthew S, Engelmann, Roger M, Laderach, Gary E, Max, Daniel, Pais, Richard C, Qing, David P Y, Roberts, Rachael Y, Smith, Amanda R, Starkey, Adam, Batrah, Poonam, Caligiuri, Philip, Farooqi, Ali, Gladish, Gregory W, Jude, C Matilda, Munden, Reginald F, Petkovska, Iva, Quint, Leslie E, Schwartz, Lawrence H, Sundaram, Baskaran, Dodd, Lori E, Fenimore, Charles, Gur, David, Petrick, Nicholas, Freymann, John, Kirby, Justin, Hughes, Brian, Casteele, Alessi Vande, Gupte, Sangeeta, Sallamm, Maha, Heath, Michael D, Kuhn, Michael H, Dharaiya, Ekta, Burns, Richard, Fryd, David S, Salganicoff, Marcos, Anand, Vikram, Shreter, Uri, Vastagh, Stephen, Croft, Barbara Y
Published in Medical physics (Lancaster) (01.02.2011)
Published in Medical physics (Lancaster) (01.02.2011)
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Multiple-response regression analysis links magnetic resonance imaging features to de-regulated protein expression and pathway activity in lower grade glioma
Lehrer, Michael, Rao, Arvind, Bhadra, Anindya, Ravikumar, Visweswaran, Chen, James Y., Wintermark, Max, Hwang, Scott N., Holder, Chad A., Huang, Erich P., Fevrier-Sullivan, Brenda, Freymann, John B.
Published in Oncoscience (23.06.2017)
Published in Oncoscience (23.06.2017)
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