Field-deployable viral diagnostics using CRISPR-Cas13
Myhrvold, Cameron, Freije, Catherine A, Gootenberg, Jonathan S, Abudayyeh, Omar O, Metsky, Hayden C, Durbin, Ann F, Kellner, Max J, Tan, Amanda L, Paul, Lauren M, Parham, Leda A, Garcia, Kimberly F, Barnes, Kayla G, Chak, Bridget, Mondini, Adriano, Nogueira, Mauricio L, Isern, Sharon, Michael, Scott F, Lorenzana, Ivette, Yozwiak, Nathan L, MacInnis, Bronwyn L, Bosch, Irene, Gehrke, Lee, Zhang, Feng, Sabeti, Pardis C
Published in Science (American Association for the Advancement of Science) (27.04.2018)
Published in Science (American Association for the Advancement of Science) (27.04.2018)
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Journal Article
Programmable Inhibition and Detection of RNA Viruses Using Cas13
Freije, Catherine A., Myhrvold, Cameron, Boehm, Chloe K., Lin, Aaron E., Welch, Nicole L., Carter, Amber, Metsky, Hayden C., Luo, Cynthia Y., Abudayyeh, Omar O., Gootenberg, Jonathan S., Yozwiak, Nathan L., Zhang, Feng, Sabeti, Pardis C.
Published in Molecular cell (05.12.2019)
Published in Molecular cell (05.12.2019)
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Journal Article
Nucleic acid detection with CRISPR-Cas13a/C2c2
Gootenberg, Jonathan S., Abudayyeh, Omar O., Lee, Jeong Wook, Essletzbichler, Patrick, Dy, Aaron J., Joung, Julia, Verdine, Vanessa, Donghia, Nina, Daringer, Nichole M., Freije, Catherine A., Myhrvold, Cameron, Bhattacharyya, Roby P., Livny, Jonathan, Regev, Aviv, Koonin, Eugene V., Hung, Deborah T., Sabeti, Pardis C., Collins, James J., Zhang, Feng
Published in Science (American Association for the Advancement of Science) (28.04.2017)
Published in Science (American Association for the Advancement of Science) (28.04.2017)
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Journal Article
Massively multiplexed nucleic acid detection with Cas13
Ackerman, Cheri M, Myhrvold, Cameron, Thakku, Sri Gowtham, Freije, Catherine A, Metsky, Hayden C, Yang, David K, Ye, Simon H, Boehm, Chloe K, Kosoko-Thoroddsen, Tinna-Sólveig F, Kehe, Jared, Nguyen, Tien G, Carter, Amber, Kulesa, Anthony, Barnes, John R, Dugan, Vivien G, Hung, Deborah T, Blainey, Paul C, Sabeti, Pardis C
Published in Nature (London) (01.06.2020)
Published in Nature (London) (01.06.2020)
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Journal Article
Zika virus evolution and spread in the Americas
Metsky, Hayden C, Matranga, Christian B, Wohl, Shirlee, Schaffner, Stephen F, Freije, Catherine A, Winnicki, Sarah M, West, Kendra, Qu, James, Baniecki, Mary Lynn, Gladden-Young, Adrianne, Lin, Aaron E, Tomkins-Tinch, Christopher H, Ye, Simon H, Park, Daniel J, Luo, Cynthia Y, Barnes, Kayla G, Shah, Rickey R, Chak, Bridget, Barbosa-Lima, Giselle, Delatorre, Edson, Vieira, Yasmine R, Paul, Lauren M, Tan, Amanda L, Barcellona, Carolyn M, Porcelli, Mario C, Vasquez, Chalmers, Cannons, Andrew C, Cone, Marshall R, Hogan, Kelly N, Kopp, Edgar W, Anzinger, Joshua J, Garcia, Kimberly F, Parham, Leda A, Ramírez, Rosa M Gélvez, Montoya, Maria C Miranda, Rojas, Diana P, Brown, Catherine M, Hennigan, Scott, Sabina, Brandon, Scotland, Sarah, Gangavarapu, Karthik, Grubaugh, Nathan D, Oliveira, Glenn, Robles-Sikisaka, Refugio, Rambaut, Andrew, Gehrke, Lee, Smole, Sandra, Halloran, M Elizabeth, Villar, Luis, Mattar, Salim, Lorenzana, Ivette, Cerbino-Neto, Jose, Valim, Clarissa, Degrave, Wim, Bozza, Patricia T, Gnirke, Andreas, Andersen, Kristian G, Isern, Sharon, Michael, Scott F, Bozza, Fernando A, Souza, Thiago M L, Bosch, Irene, Yozwiak, Nathan L, MacInnis, Bronwyn L, Sabeti, Pardis C
Published in Nature (London) (15.06.2017)
Published in Nature (London) (15.06.2017)
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Journal Article
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
Grubaugh, Nathan D, Ladner, Jason T, Kraemer, Moritz U G, Dudas, Gytis, Tan, Amanda L, Gangavarapu, Karthik, Wiley, Michael R, White, Stephen, Thézé, Julien, Magnani, Diogo M, Prieto, Karla, Reyes, Daniel, Bingham, Andrea M, Paul, Lauren M, Robles-Sikisaka, Refugio, Oliveira, Glenn, Pronty, Darryl, Barcellona, Carolyn M, Metsky, Hayden C, Baniecki, Mary Lynn, Barnes, Kayla G, Chak, Bridget, Freije, Catherine A, Gladden-Young, Adrianne, Gnirke, Andreas, Luo, Cynthia, MacInnis, Bronwyn, Matranga, Christian B, Park, Daniel J, Qu, James, Schaffner, Stephen F, Tomkins-Tinch, Christopher, West, Kendra L, Winnicki, Sarah M, Wohl, Shirlee, Yozwiak, Nathan L, Quick, Joshua, Fauver, Joseph R, Khan, Kamran, Brent, Shannon E, Reiner, Jr, Robert C, Lichtenberger, Paola N, Ricciardi, Michael J, Bailey, Varian K, Watkins, David I, Cone, Marshall R, Kopp, 4th, Edgar W, Hogan, Kelly N, Cannons, Andrew C, Jean, Reynald, Monaghan, Andrew J, Garry, Robert F, Loman, Nicholas J, Faria, Nuno R, Porcelli, Mario C, Vasquez, Chalmers, Nagle, Elyse R, Cummings, Derek A T, Stanek, Danielle, Rambaut, Andrew, Sanchez-Lockhart, Mariano, Sabeti, Pardis C, Gillis, Leah D, Michael, Scott F, Bedford, Trevor, Pybus, Oliver G, Isern, Sharon, Palacios, Gustavo, Andersen, Kristian G
Published in Nature (London) (15.06.2017)
Published in Nature (London) (15.06.2017)
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Journal Article
Transcriptomic characterization of fibrolamellar hepatocellular carcinoma
Simon, Elana P., Freije, Catherine A., Farber, Benjamin A., Lalazar, Gadi, Darcy, David G., Honeyman, Joshua N., Chiaroni-Clarke, Rachel, Dill, Brian D., Molina, Henrik, Bhanot, Umesh K., La Quaglia, Michael P., Rosenberg, Brad R., Simon, Sanford M.
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2015)
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Journal Article
Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance
Rosenberg, Brad R, Depla, Marion, Freije, Catherine A, Gaucher, Denis, Mazouz, Sabrina, Boisvert, Maude, Bédard, Nathalie, Bruneau, Julie, Rice, Charles M, Shoukry, Naglaa H
Published in PLoS pathogens (01.09.2018)
Published in PLoS pathogens (01.09.2018)
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Journal Article
Deep mutational scanning of hepatitis B virus reveals a mechanism for cis-preferential reverse transcription
Yu, Yingpu, Kass, Maximilian A., Zhang, Mengyin, Youssef, Noor, Freije, Catherine A., Brock, Kelly P., Aguado, Lauren C., Seifert, Leon L., Venkittu, Sanjana, Hong, Xupeng, Shlomai, Amir, de Jong, Ype P., Marks, Debora S., Rice, Charles M., Schneider, William M.
Published in Cell (23.05.2024)
Published in Cell (23.05.2024)
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Journal Article
Simplified Cas13-based assays for the fast identification of SARS-CoV-2 and its variants
Arizti-Sanz, Jon, Bradley, A'Doriann, Zhang, Yibin B, Boehm, Chloe K, Freije, Catherine A, Grunberg, Michelle E, Kosoko-Thoroddsen, Tinna-Solveig F, Welch, Nicole L, Pillai, Priya P, Mantena, Sreekar, Kim, Gaeun, Uwanibe, Jessica N, John, Oluwagboadurami G, Eromon, Philomena E, Kocher, Gregory, Gross, Robin, Lee, Justin S, Hensley, Lisa E, MacInnis, Bronwyn L, Johnson, Jeremy, Springer, Michael, Happi, Christian T, Sabeti, Pardis C, Myhrvold, Cameron
Published in Nature biomedical engineering (01.08.2022)
Published in Nature biomedical engineering (01.08.2022)
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Journal Article
A genome-wide arrayed CRISPR screen identifies PLSCR1 as an intrinsic barrier to SARS-CoV-2 entry that recent virus variants have evolved to resist
Le Pen, Jérémie, Paniccia, Gabrielle, Kinast, Volker, Moncada-Velez, Marcela, Ashbrook, Alison W, Bauer, Michael, Hoffmann, H-Heinrich, Pinharanda, Ana, Ricardo-Lax, Inna, Stenzel, Ansgar F, Rosado-Olivieri, Edwin A, Dinnon, 3rd, Kenneth H, Doyle, William C, Freije, Catherine A, Hong, Seon-Hui, Lee, Danyel, Lewy, Tyler, Luna, Joseph M, Peace, Avery, Schmidt, Carltin, Schneider, William M, Winkler, Roni, Yip, Elaine Z, Larson, Chloe, McGinn, Timothy, Menezes, Miriam-Rose, Ramos-Espiritu, Lavoisier, Banerjee, Priyam, Poirier, John T, Sànchez-Rivera, Francisco J, Cobat, Aurélie, Zhang, Qian, Casanova, Jean-Laurent, Carroll, Thomas S, Glickman, J Fraser, Michailidis, Eleftherios, Razooky, Brandon, MacDonald, Margaret R, Rice, Charles M
Published in PLoS biology (24.09.2024)
Published in PLoS biology (24.09.2024)
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Journal Article
Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2
Arizti-Sanz, Jon, Freije, Catherine A, Stanton, Alexandra C, Petros, Brittany A, Boehm, Chloe K, Siddiqui, Sameed, Shaw, Bennett M, Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F, Kemball, Molly E, Uwanibe, Jessica N, Ajogbasile, Fehintola V, Eromon, Philomena E, Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E, Bergman, Nicholas H, MacInnis, Bronwyn L, Happi, Christian T, Lemieux, Jacob E, Sabeti, Pardis C, Myhrvold, Cameron
Published in Nature communications (20.11.2020)
Published in Nature communications (20.11.2020)
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Journal Article
Genetic Variation at IFNL4 Influences Extrahepatic Interferon-Stimulated Gene Expression in Chronic HCV Patients
Rosenberg, Brad R, Freije, Catherine A, Imanaka, Naoko, Chen, Spencer T, Eitson, Jennifer L, Caron, Rachel, Uhl, Skyler A, Zeremski, Marija, Talal, Andrew, Jacobson, Ira M, Rice, Charles M, Schoggins, John W
Published in The Journal of infectious diseases (30.01.2018)
Published in The Journal of infectious diseases (30.01.2018)
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Journal Article
Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection
Piantadosi, Anne, Freije, Catherine A, Gosmann, Christina, Ye, Simon, Park, Daniel, Schaffner, Stephen F, Tully, Damien C, Allen, Todd M, Dong, Krista L, Sabeti, Pardis C, Kwon, Douglas S
Published in Journal of virology (15.01.2019)
Published in Journal of virology (15.01.2019)
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Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis
Normandin, Erica, Solomon, Isaac H, Zamirpour, Siavash, Lemieux, Jacob, Freije, Catherine A, Mukerji, Shibani S, Tomkins-Tinch, Christopher, Park, Daniel, Sabeti, Pardis C, Piantadosi, Anne
Published in Open forum infectious diseases (01.10.2020)
Published in Open forum infectious diseases (01.10.2020)
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Journal Article
An RNA-based system to study hepatitis B virus replication and evaluate antivirals
Yu, Yingpu, Schneider, William M, Kass, Maximilian A, Michailidis, Eleftherios, Acevedo, Ashley, Pamplona Mosimann, Ana L, Bordignon, Juliano, Koenig, Alexander, Livingston, Christine M, van Gijzel, Hardeep, Ni, Yi, Ambrose, Pradeep M, Freije, Catherine A, Zhang, Mengyin, Zou, Chenhui, Kabbani, Mohammad, Quirk, Corrine, Jahan, Cyprien, Wu, Xianfang, Urban, Stephan, You, Shihyun, Shlomai, Amir, de Jong, Ype P, Rice, Charles M
Published in Science advances (14.04.2023)
Published in Science advances (14.04.2023)
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Journal Article
Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018
Siddle, Katherine J, Eromon, Philomena, Barnes, Kayla G, Mehta, Samar, Oguzie, Judith U, Odia, Ikponmwosa, Schaffner, Stephen F, Winnicki, Sarah M, Shah, Rickey R, Qu, James, Wohl, Shirlee, Brehio, Patrick, Iruolagbe, Christopher, Aiyepada, John, Uyigue, Eghosa, Akhilomen, Patience, Okonofua, Grace, Ye, Simon, Kayode, Tolulope, Ajogbasile, Fehintola, Uwanibe, Jessica, Gaye, Amy, Momoh, Mambu, Chak, Bridget, Kotliar, Dylan, Carter, Amber, Gladden-Young, Adrianne, Freije, Catherine A, Omoregie, Omigie, Osiemi, Blessing, Muoebonam, Ekene B, Airende, Michael, Enigbe, Rachael, Ebo, Benevolence, Nosamiefan, Iguosadolo, Oluniyi, Paul, Nekoui, Mahan, Ogbaini-Emovon, Ephraim, Garry, Robert F, Andersen, Kristian G, Park, Daniel J, Yozwiak, Nathan L, Akpede, George, Ihekweazu, Chikwe, Tomori, Oyewale, Okogbenin, Sylvanus, Folarin, Onikepe A, Okokhere, Peter O, MacInnis, Bronwyn L, Sabeti, Pardis C, Happi, Christian T
Published in The New England journal of medicine (01.11.2018)
Published in The New England journal of medicine (01.11.2018)
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Journal Article
Equipment-free detection of SARS-CoV-2 and Variants of Concern using Cas13
Arizti-Sanz, Jon, Bradley, A'Doriann, Zhang, Yibin B, Boehm, Chloe K, Freije, Catherine A, Grunberg, Michelle E, Kosoko-Thoroddsen, Tinna-Solveig F, Welch, Nicole L, Pillai, Priya P, Mantena, Sreekar, Kim, Gaeun, Uwanibe, Jessica N, John, Oluwagboadurami G, Eromon, Philomena E, Kocher, Gregory, Gross, Robin, Lee, Justin S, Hensley, Lisa E, Happi, Christian T, Johnson, Jeremy, Sabeti, Pardis C, Myhrvold, Cameron
Published in medRxiv : the preprint server for health sciences (02.11.2021)
Published in medRxiv : the preprint server for health sciences (02.11.2021)
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Inborn Errors of RNA Lariat Metabolism in Humans with Brainstem Viral Infection
Zhang, Shen-Ying, Clark, Nathaniel E., Freije, Catherine A., Pauwels, Elodie, Taggart, Allison J., Okada, Satoshi, Mandel, Hanna, Garcia, Paula, Ciancanelli, Michael J., Biran, Anat, Lafaille, Fabien G., Tsumura, Miyuki, Cobat, Aurélie, Luo, Jingchuan, Volpi, Stefano, Zimmer, Bastian, Sakata, Sonoko, Dinis, Alexandra, Ohara, Osamu, Garcia Reino, Eduardo J., Dobbs, Kerry, Hasek, Mary, Holloway, Stephen P., McCammon, Karen, Hussong, Stacy A., DeRosa, Nicholas, Van Skike, Candice E., Katolik, Adam, Lorenzo, Lazaro, Hyodo, Maki, Faria, Emilia, Halwani, Rabih, Fukuhara, Rie, Smith, Gregory A., Galvan, Veronica, Damha, Masad J., Al-Muhsen, Saleh, Itan, Yuval, Boeke, Jef D., Notarangelo, Luigi D., Studer, Lorenz, Kobayashi, Masao, Diogo, Luisa, Fairbrother, William G., Abel, Laurent, Rosenberg, Brad R., Hart, P. John, Etzioni, Amos, Casanova, Jean-Laurent
Published in Cell (22.02.2018)
Published in Cell (22.02.2018)
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