A large-scale binding and functional map of human RNA-binding proteins
Van Nostrand, Eric L, Freese, Peter, Pratt, Gabriel A, Wang, Xiaofeng, Wei, Xintao, Xiao, Rui, Blue, Steven M, Chen, Jia-Yu, Cody, Neal A L, Dominguez, Daniel, Olson, Sara, Sundararaman, Balaji, Zhan, Lijun, Bazile, Cassandra, Bouvrette, Louis Philip Benoit, Bergalet, Julie, Duff, Michael O, Garcia, Keri E, Gelboin-Burkhart, Chelsea, Hochman, Myles, Lambert, Nicole J, Li, Hairi, McGurk, Michael P, Nguyen, Thai B, Palden, Tsultrim, Rabano, Ines, Sathe, Shashank, Stanton, Rebecca, Su, Amanda, Wang, Ruth, Yee, Brian A, Zhou, Bing, Louie, Ashley L, Aigner, Stefan, Fu, Xiang-Dong, Lécuyer, Eric, Burge, Christopher B, Graveley, Brenton R, Yeo, Gene W
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
Get full text
Journal Article
Antagonistic regulation of mRNA expression and splicing by CELF and MBNL proteins
Wang, Eric T, Ward, Amanda J, Cherone, Jennifer M, Giudice, Jimena, Wang, Thomas T, Treacy, Daniel J, Lambert, Nicole J, Freese, Peter, Saxena, Tanvi, Cooper, Thomas A, Burge, Christopher B
Published in Genome research (01.06.2015)
Published in Genome research (01.06.2015)
Get full text
Journal Article
Genetic Drift Suppresses Bacterial Conjugation in Spatially Structured Populations
Freese, Peter D., Korolev, Kirill S., Jiménez, José I., Chen, Irene A.
Published in Biophysical journal (18.02.2014)
Published in Biophysical journal (18.02.2014)
Get full text
Journal Article
Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses
Kapeli, Katannya, Pratt, Gabriel A, Vu, Anthony Q, Hutt, Kasey R, Martinez, Fernando J, Sundararaman, Balaji, Batra, Ranjan, Freese, Peter, Lambert, Nicole J, Huelga, Stephanie C, Chun, Seung J, Liang, Tiffany Y, Chang, Jeremy, Donohue, John P, Shiue, Lily, Zhang, Jiayu, Zhu, Haining, Cambi, Franca, Kasarskis, Edward, Hoon, Shawn, Ares, Jr, Manuel, Burge, Christopher B, Ravits, John, Rigo, Frank, Yeo, Gene W
Published in Nature communications (05.07.2016)
Published in Nature communications (05.07.2016)
Get full text
Journal Article
Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System
Martinez, Fernando J., Pratt, Gabriel A., Van Nostrand, Eric L., Batra, Ranjan, Huelga, Stephanie C., Kapeli, Katannya, Freese, Peter, Chun, Seung J., Ling, Karen, Gelboin-Burkhart, Chelsea, Fijany, Layla, Wang, Harrison C., Nussbacher, Julia K., Broski, Sara M., Kim, Hong Joo, Lardelli, Rea, Sundararaman, Balaji, Donohue, John P., Javaherian, Ashkan, Lykke-Andersen, Jens, Finkbeiner, Steven, Bennett, C. Frank, Ares, Manuel, Burge, Christopher B., Taylor, J. Paul, Rigo, Frank, Yeo, Gene W.
Published in Neuron (Cambridge, Mass.) (23.11.2016)
Published in Neuron (Cambridge, Mass.) (23.11.2016)
Get full text
Journal Article
Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival
Conway, Anne E., Van Nostrand, Eric L., Pratt, Gabriel A., Aigner, Stefan, Wilbert, Melissa L., Sundararaman, Balaji, Freese, Peter, Lambert, Nicole J., Sathe, Shashank, Liang, Tiffany Y., Essex, Anthony, Landais, Severine, Burge, Christopher B., Jones, D. Leanne, Yeo, Gene W.
Published in Cell reports (Cambridge) (19.04.2016)
Published in Cell reports (Cambridge) (19.04.2016)
Get full text
Journal Article
Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA
Yang, Ei-Wen, Bahn, Jae Hoon, Hsiao, Esther Yun-Hua, Tan, Boon Xin, Sun, Yiwei, Fu, Ting, Zhou, Bo, Van Nostrand, Eric L, Pratt, Gabriel A, Freese, Peter, Wei, Xintao, Quinones-Valdez, Giovanni, Urban, Alexander E, Graveley, Brenton R, Burge, Christopher B, Yeo, Gene W, Xiao, Xinshu
Published in Nature communications (22.03.2019)
Published in Nature communications (22.03.2019)
Get full text
Journal Article
A Novel Tissue-Free Method to Estimate Tumor-Derived Cell-Free DNA Quantity Using Tumor Methylation Patterns
Melton, Collin A, Freese, Peter, Zhou, Yifan, Shenoy, Archana, Bagaria, Siddhartha, Chang, Christopher, Kuo, Chih-Chung, Scott, Eric, Srinivasan, Subashini, Cann, Gordon, Roychowdhury-Saha, Manami, Chang, Pei-Yun, Singh, Amoolya H
Published in Cancers (23.12.2023)
Published in Cancers (23.12.2023)
Get full text
Journal Article
Sequence, Structure, and Context Preferences of Human RNA Binding Proteins
Dominguez, Daniel, Freese, Peter, Alexis, Maria S., Su, Amanda, Hochman, Myles, Palden, Tsultrim, Bazile, Cassandra, Lambert, Nicole J., Van Nostrand, Eric L., Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Burge, Christopher B.
Published in Molecular cell (07.06.2018)
Published in Molecular cell (07.06.2018)
Get full text
Journal Article
Circulating Tumor DNA Allele Fraction: A Candidate Biological Signal for Multicancer Early Detection Tests to Assess the Clinical Significance of Cancers
Bredno, Joerg, Venn, Oliver, Chen, Xiaoji, Freese, Peter, Ofman, Joshua J
Published in The American journal of pathology (01.10.2022)
Published in The American journal of pathology (01.10.2022)
Get full text
Journal Article
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
Get full text
Journal Article
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA
Liu, M.C., Klein, E.A., Swanton, C., Seiden, M.V., Klein, Eric A., Yeatman, Timothy J., Cohn, Allen L., Lapham, Rosanna, Parker, Alexander S., McIntyre, Kristi, Sekeres, Mikkael A., Siegel, Robert, Wang, Xuezhong, Cosgrove, David P., Trent, Jonathan, Thiel, David D., Garbo, Lawrence E., Giguere, Jeffrey K., Michels, Ross M., Harris, Ronald P., Richey, Stephen L., McCarthy, Timothy A., Couch, Fergus J., Wilks, Sharon T., Krie, Amy K., Balaraman, Rama, Rieger-Christ, Kimberly, Sullivan, Travis, Greenwald, Daniel R., Oh, William, Tsao, Che-Kai, Kennecke, Hagen F., Manhas, Atisha P., Ulrich, Brian K., Kovoor, Philip A., Stokoe, Christopher, Courtright, Jay G., Larson, Timothy G., Seiden, Michael V., Cummings, Steven R., Absalan, Farnaz, Alexander, Gregory, Allen, Brian, Aravanis, Alexander M., Beausang, John F., Berman, Jennifer, Bredno, Joerg, Calef, Robert, Cann, Gordon, Carter, Jeremy, Chen, Xiaoji, Chien, Tom C., Davydov, Konstantin, Demas, Vasiliki, Fields, Alexander P., Freese, Peter, Gnerre, Sante, Gross, Samuel, Hall, Megan P., Hartman, Anne-Renee, Hou, Chenlu, Hubbell, Earl, Jiang, Roger, Kim, TaeHyung, Klausner, Richard D., Kurtzman, Kathryn N., Lee, Mark, Lin, Wendy, Lipson, Jafi, Maddala, Tara, Maher, M. Cyrus, Melton, Collin, Mich, Andrea, Newman, Joshua, Nicula, Virgil, Nikolic, Ongjen, Patel, Shilpen, Rava, Richard, Schellenberger, Jan, Scott, Eric, Sehnert, Amy J., Shaknovich, Rita, Shanmugam, Avinash, Shashidhar, K.C., Shenoy, Archana, Shojaee, Seyedmehdi, Tang, Susan, Valouev, Anton, Venn, Oliver, Williams, Richard T., Wu, Tony, Yakym, Christopher, Yang, Xiao, Yecies, Jessica, Yip, Alexander S., Yue, Jeanne, Zhang, Lily, Zhang, Lori (Quan), Curtis, Christina, Berry, Donald A.
Published in Annals of oncology (01.06.2020)
Published in Annals of oncology (01.06.2020)
Get full text
Journal Article
Circulating Tumor DNA Allele Fraction
Bredno, Joerg, Venn, Oliver, Chen, Xiaoji, Freese, Peter, Ofman, Joshua J.
Published in The American journal of pathology (01.10.2022)
Published in The American journal of pathology (01.10.2022)
Get full text
Journal Article
Evaluation of cell-free DNA approaches for multi-cancer early detection
Jamshidi, Arash, Liu, Minetta C., Klein, Eric A., Venn, Oliver, Hubbell, Earl, Beausang, John F., Gross, Samuel, Melton, Collin, Fields, Alexander P., Liu, Qinwen, Zhang, Nan, Fung, Eric T., Kurtzman, Kathryn N., Amini, Hamed, Betts, Craig, Civello, Daniel, Freese, Peter, Calef, Robert, Davydov, Konstantin, Fayzullina, Saniya, Hou, Chenlu, Jiang, Roger, Jung, Byoungsok, Tang, Susan, Demas, Vasiliki, Newman, Joshua, Sakarya, Onur, Scott, Eric, Shenoy, Archana, Shojaee, Seyedmehdi, Steffen, Kristan K., Nicula, Virgil, Chien, Tom C., Bagaria, Siddhartha, Hunkapiller, Nathan, Desai, Mohini, Dong, Zhao, Richards, Donald A., Yeatman, Timothy J., Cohn, Allen L., Thiel, David D., Berry, Donald A., Tummala, Mohan K., McIntyre, Kristi, Sekeres, Mikkael A., Bryce, Alan, Aravanis, Alexander M., Seiden, Michael V., Swanton, Charles
Published in Cancer cell (12.12.2022)
Published in Cancer cell (12.12.2022)
Get full text
Journal Article
Perspectives on ENCODE
Snyder, Michael P, Gingeras, Thomas R, Moore, Jill E, Weng, Zhiping, Gerstein, Mark B, Ren, Bing, Hardison, Ross C, Stamatoyannopoulos, John A, Graveley, Brenton R, Feingold, Elise A, Pazin, Michael J, Pagan, Michael, Gilchrist, Daniel A, Hitz, Benjamin C, Cherry, J Michael, Bernstein, Bradley E, Mendenhall, Eric M, Zerbino, Daniel R, Frankish, Adam, Flicek, Paul, Myers, Richard M
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
Get full text
Journal Article
국재화 정확도를 위한 조건부 기원 조직 리턴
VENN OLIVER CLAUDE, GROSS SAMUEL S, JAMSHIDI ARASH, FREESE PETER D, CALEF ROBERT ABE PAINE
Year of Publication 07.12.2023
Get full text
Year of Publication 07.12.2023
Patent
Author Correction: Perspectives on ENCODE
Snyder, Michael P, Gingeras, Thomas R, Moore, Jill E, Weng, Zhiping, Gerstein, Mark B, Ren, Bing, Hardison, Ross C, Stamatoyannopoulos, John A, Graveley, Brenton R, Feingold, Elise A, Pazin, Michael J, Pagan, Michael, Gilchrist, Daniel A, Hitz, Benjamin C, Cherry, J Michael, Bernstein, Bradley E, Mendenhall, Eric M, Zerbino, Daniel R, Frankish, Adam, Flicek, Paul, Myers, Richard M
Published in Nature (London) (12.05.2022)
Published in Nature (London) (12.05.2022)
Get full text
Journal Article
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Moore, Jill E, Purcaro, Michael J, Pratt, Henry E, Epstein, Charles B, Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A, Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L, Freese, Peter, Gorkin, David U, Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A, Mortazavi, Ali, Keller, Cheryl A, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Huey, Jack, Dickel, Diane E, Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B, Zhang, Jialing, Victorsen, Alec, White, Kevin P, Visel, Axel, Yeo, Gene W, Burge, Christopher B, Lécuyer, Eric, Gilbert, David M, Dekker, Job, Rinn, John, Mendenhall, Eric M, Ecker, Joseph R, Kellis, Manolis, Klein, Robert J, Noble, William S, Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J, Cherry, J Michael, Myers, Richard M, Ren, Bing, Graveley, Brenton R, Gerstein, Mark B, Pennacchio, Len A, Snyder, Michael P, Bernstein, Bradley E, Wold, Barbara, Hardison, Ross C, Gingeras, Thomas R, Stamatoyannopoulos, John A, Weng, Zhiping
Published in Nature (London) (12.05.2022)
Published in Nature (London) (12.05.2022)
Get full text
Journal Article