ilastik: interactive machine learning for (bio)image analysis
Berg, Stuart, Kutra, Dominik, Kroeger, Thorben, Straehle, Christoph N, Kausler, Bernhard X, Haubold, Carsten, Schiegg, Martin, Ales, Janez, Beier, Thorsten, Rudy, Markus, Eren, Kemal, Cervantes, Jaime I, Xu, Buote, Beuttenmueller, Fynn, Wolny, Adrian, Zhang, Chong, Koethe, Ullrich, Hamprecht, Fred A, Kreshuk, Anna
Published in Nature methods (01.12.2019)
Published in Nature methods (01.12.2019)
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Journal Article
An objective comparison of cell-tracking algorithms
Ulman, Vladimír, Maška, Martin, Magnusson, Klas E G, Ronneberger, Olaf, Haubold, Carsten, Harder, Nathalie, Matula, Pavel, Matula, Petr, Svoboda, David, Radojevic, Miroslav, Smal, Ihor, Rohr, Karl, Jaldén, Joakim, Blau, Helen M, Dzyubachyk, Oleh, Lelieveldt, Boudewijn, Xiao, Pengdong, Li, Yuexiang, Cho, Siu-Yeung, Dufour, Alexandre C, Olivo-Marin, Jean-Christophe, Reyes-Aldasoro, Constantino C, Solis-Lemus, Jose A, Bensch, Robert, Brox, Thomas, Stegmaier, Johannes, Mikut, Ralf, Wolf, Steffen, Hamprecht, Fred A, Esteves, Tiago, Quelhas, Pedro, Demirel, Ömer, Malmström, Lars, Jug, Florian, Tomancak, Pavel, Meijering, Erik, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
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Journal Article
Accurate and versatile 3D segmentation of plant tissues at cellular resolution
Wolny, Adrian, Cerrone, Lorenzo, Vijayan, Athul, Tofanelli, Rachele, Barro, Amaya Vilches, Louveaux, Marion, Wenzl, Christian, Strauss, Sören, Wilson-Sánchez, David, Lymbouridou, Rena, Steigleder, Susanne S, Pape, Constantin, Bailoni, Alberto, Duran-Nebreda, Salva, Bassel, George W, Lohmann, Jan U, Tsiantis, Miltos, Hamprecht, Fred A, Schneitz, Kay, Maizel, Alexis, Kreshuk, Anna
Published in eLife (29.07.2020)
Published in eLife (29.07.2020)
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Journal Article
Seipin forms a flexible cage at lipid droplet formation sites
Arlt, Henning, Sui, Xuewu, Folger, Brayden, Adams, Carson, Chen, Xiao, Remme, Roman, Hamprecht, Fred A, DiMaio, Frank, Liao, Maofu, Goodman, Joel M, Farese, Jr, Robert V, Walther, Tobias C
Published in Nature structural & molecular biology (01.03.2022)
Published in Nature structural & molecular biology (01.03.2022)
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Journal Article
End-to-End Learning of Decision Trees and Forests
Hehn, Thomas M., Kooij, Julian F. P., Hamprecht, Fred A.
Published in International journal of computer vision (01.04.2020)
Published in International journal of computer vision (01.04.2020)
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Journal Article
Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures
Imle, Andrea, Kumberger, Peter, Schnellbächer, Nikolas D, Fehr, Jana, Carrillo-Bustamante, Paola, Ales, Janez, Schmidt, Philip, Ritter, Christian, Godinez, William J, Müller, Barbara, Rohr, Karl, Hamprecht, Fred A, Schwarz, Ulrich S, Graw, Frederik, Fackler, Oliver T
Published in Nature communications (13.05.2019)
Published in Nature communications (13.05.2019)
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Journal Article
Multicut brings automated neurite segmentation closer to human performance
Beier, Thorsten, Pape, Constantin, Rahaman, Nasim, Prange, Timo, Berg, Stuart, Bock, Davi D, Cardona, Albert, Knott, Graham W, Plaza, Stephen M, Scheffer, Louis K, Koethe, Ullrich, Kreshuk, Anna, Hamprecht, Fred A
Published in Nature methods (01.02.2017)
Published in Nature methods (01.02.2017)
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Journal Article
A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule
Vijayan, Athul, Tofanelli, Rachele, Strauss, Sören, Cerrone, Lorenzo, Wolny, Adrian, Strohmeier, Joanna, Kreshuk, Anna, Hamprecht, Fred A, Smith, Richard S, Schneitz, Kay
Published in eLife (06.01.2021)
Published in eLife (06.01.2021)
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Journal Article
A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data
Menze, Bjoern H, Kelm, B Michael, Masuch, Ralf, Himmelreich, Uwe, Bachert, Peter, Petrich, Wolfgang, Hamprecht, Fred A
Published in BMC bioinformatics (10.07.2009)
Published in BMC bioinformatics (10.07.2009)
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Journal Article
Graphical model for joint segmentation and tracking of multiple dividing cells
Schiegg, Martin, Hanslovsky, Philipp, Haubold, Carsten, Koethe, Ullrich, Hufnagel, Lars, Hamprecht, Fred A
Published in Bioinformatics (15.03.2015)
Published in Bioinformatics (15.03.2015)
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Journal Article
Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
Calì, Corrado, Baghabra, Jumana, Boges, Daniya J., Holst, Glendon R., Kreshuk, Anna, Hamprecht, Fred A., Srinivasan, Madhusudhanan, Lehväslaiho, Heikki, Magistretti, Pierre J.
Published in Journal of comparative neurology (1911) (01.01.2016)
Published in Journal of comparative neurology (1911) (01.01.2016)
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Journal Article
Automated detection of synapses in serial section transmission electron microscopy image stacks
Kreshuk, Anna, Koethe, Ullrich, Pax, Elizabeth, Bock, Davi D, Hamprecht, Fred A
Published in PloS one (06.02.2014)
Published in PloS one (06.02.2014)
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Journal Article
Integration of Cell Growth and Asymmetric Division during Lateral Root Initiation in Arabidopsis thaliana
Schütz, Lilli Marie, Louveaux, Marion, Vilches Barro, Amaya, Bouziri, Sami, Cerrone, Lorenzo, Wolny, Adrian, Kreshuk, Anna, Hamprecht, Fred A, Maizel, Alexis
Published in Plant and cell physiology (10.11.2021)
Published in Plant and cell physiology (10.11.2021)
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Journal Article
Semiautomated correlative 3D electron microscopy of in vivo-imaged axons and dendrites
Maco, Bohumil, Cantoni, Marco, Holtmaat, Anthony, Kreshuk, Anna, Hamprecht, Fred A, Knott, Graham W
Published in Nature protocols (01.06.2014)
Published in Nature protocols (01.06.2014)
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Journal Article
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics
Koenig, Thomas, Menze, Bjoern H, Kirchner, Marc, Monigatti, Flavio, Parker, Kenneth C, Patterson, Thomas, Steen, Judith Jebanathirajah, Hamprecht, Fred A, Steen, Hanno
Published in Journal of proteome research (01.09.2008)
Published in Journal of proteome research (01.09.2008)
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Journal Article
Concise Representation of Mass Spectrometry Images by Probabilistic Latent Semantic Analysis
Hanselmann, Michael, Kirchner, Marc, Renard, Bernhard Y, Amstalden, Erika R, Glunde, Kristine, Heeren, Ron M. A, Hamprecht, Fred A
Published in Analytical chemistry (Washington) (15.12.2008)
Published in Analytical chemistry (Washington) (15.12.2008)
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Journal Article
One plus one makes three (for social networks)
Horvát, Emőke-Ágnes, Horvát, Emöke-Ágnes, Hanselmann, Michael, Hamprecht, Fred A, Zweig, Katharina A
Published in PloS one (06.04.2012)
Published in PloS one (06.04.2012)
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Journal Article
When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification
Renard, Bernhard Y, Kirchner, Marc, Monigatti, Flavio, Ivanov, Alexander R, Rappsilber, Juri, Winter, Dominic, Steen, Judith A.J, Hamprecht, Fred A, Steen, Hanno
Published in Proteomics (Weinheim) (01.11.2009)
Published in Proteomics (Weinheim) (01.11.2009)
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