Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county
Paredes, Miguel I, Perofsky, Amanda C, Frisbie, Lauren, Moncla, Louise H, Roychoudhury, Pavitra, Xie, Hong, Bakhash, Shah A Mohamed, Kong, Kevin, Arnould, Isabel, Nguyen, Tien V, Wendm, Seffir T, Hajian, Pooneh, Ellis, Sean, Mathias, Patrick C, Greninger, Alexander L, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, Stone, Jeremy, McDermot, Evan, Truong, Melissa, Shendure, Jay, Oltean, Hanna N, Viboud, Cécile, Chu, Helen, Müller, Nicola F, Bedford, Trevor
Published in PLoS pathogens (01.03.2024)
Published in PLoS pathogens (01.03.2024)
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Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study
Paredes, Miguel I, Lunn, Stephanie M, Famulare, Michael, Frisbie, Lauren A, Painter, Ian, Burstein, Roy, Roychoudhury, Pavitra, Xie, Hong, Mohamed Bakhash, Shah A, Perez, Ricardo, Lukes, Maria, Ellis, Sean, Sathees, Saraswathi, Mathias, Patrick C, Greninger, Alexander, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, McDermot, Evan, Truong, Melissa, Nickerson, Deborah A, Bates, Daniel L, Hartman, Matthew E, Haugen, Eric, Nguyen, Truong N, Richards, Joshua D, Rodriguez, Jacob L, Stamatoyannopoulos, John A, Thorland, Eric, Melly, Geoff, Dykema, Philip E, MacKellar, Drew C, Gray, Hannah K, Singh, Avi, Peterson, JohnAric M, Russell, Denny, Torres, Laura Marcela, Lindquist, Scott, Bedford, Trevor, Allen, Krisandra J, Oltean, Hanna N
Published in Clinical infectious diseases (24.08.2022)
Published in Clinical infectious diseases (24.08.2022)
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Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
Müller, Nicola F, Wagner, Cassia, Frazar, Chris D, Roychoudhury, Pavitra, Lee, Jover, Moncla, Louise H, Pelle, Benjamin, Richardson, Matthew, Ryke, Erica, Xie, Hong, Shrestha, Lasata, Addetia, Amin, Rachleff, Victoria M, Lieberman, Nicole A P, Huang, Meei-Li, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Adler, Amanda, Brandstetter, Elisabeth, Han, Peter D, Fay, Kairsten, Ilcisin, Misja, Lacombe, Kirsten, Sibley, Thomas R, Truong, Melissa, Wolf, Caitlin R, Boeckh, Michael, Englund, Janet A, Famulare, Michael, Lutz, Barry R, Rieder, Mark J, Thompson, Matthew, Duchin, Jeffrey S, Starita, Lea M, Chu, Helen Y, Shendure, Jay, Jerome, Keith R, Lindquist, Scott, Greninger, Alexander L, Nickerson, Deborah A, Bedford, Trevor
Published in Science Translational Medicine (26.05.2021)
Published in Science Translational Medicine (26.05.2021)
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Incidence of Medically Attended Acute Respiratory Illnesses Due to Respiratory Viruses Across the Life Course During the 2018/19 Influenza Season
Jackson, Michael L, Starita, Lea, Kiniry, Erika, Phillips, C Hallie, Wellwood, Stacie, Cho, Shari, Kiavand, Anahita, Truong, Melissa, Han, Peter, Richardson, Matthew, Wolf, Caitlin R, Heimonen, Jessica, Nickerson, Deborah A, Chu, Helen Y
Published in Clinical Infectious Diseases (16.02.2021)
Published in Clinical Infectious Diseases (16.02.2021)
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Single suture craniosynostosis: Identification of rare variants in genes associated with syndromic forms
Clarke, Christine M., Fok, Vincent T., Gustafson, Jennifer A., Smyth, Matthew D., Timms, Andrew E., Frazar, Chris D., Smith, Joshua D., Birgfeld, Craig B., Lee, Amy, Ellenbogen, Richard G., Gruss, Joseph S., Hopper, Richard A., Cunningham, Michael L.
Published in American journal of medical genetics. Part A (01.02.2018)
Published in American journal of medical genetics. Part A (01.02.2018)
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Analysis of exome sequencing data sets reveals structural variation in the coding region of ABO in individuals of African ancestry
Fox, Keolu, Johnsen, Jill M., Coe, Bradley P., Frazar, Chris D., Reiner, Alexander P., Eichler, Evan E., Nickerson, Deborah A.
Published in Transfusion (Philadelphia, Pa.) (01.11.2016)
Published in Transfusion (Philadelphia, Pa.) (01.11.2016)
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Cryptic transmission of SARS-CoV-2 in Washington state
Bedford, Trevor, Greninger, Alexander L, Roychoudhury, Pavitra, Starita, Lea M, Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N, Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D, Fay, Kairsten, Frazar, Chris D, Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R, Truong, Melissa, Wolf, Caitlin R, Nickerson, Deborah A, Rieder, Mark J, Englund, Janet A, Hadfield, James, Hodcroft, Emma B, Huddleston, John, Moncla, Louise H, Müller, Nicola F, Neher, Richard A, Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeffrey S, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L, Baird, Geoffrey S, Chu, Helen Y, Shendure, Jay, Jerome, Keith R
Published in Science (30.10.2020)
Published in Science (30.10.2020)
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Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study
Paredes, Miguel I, Lunn, Stephanie M, Famulare, Michael, Frisbie, Lauren A, Painter, Ian, Burstein, Roy, Roychoudhury, Pavitra, Xie, Hong, Mohamed Bakhash, Shah A, Perez, Ricardo, Lukes, Maria, Ellis, Sean, Sathees, Saraswathi, Mathias, Patrick C, Greninger, Alexander, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, McDermot, Evan, Truong, Melissa, Nickerson, Deborah A, Bates, Daniel L, Hartman, Matthew E, Haugen, Eric, Nguyen, Truong N, Richards, Joshua D, Rodriguez, Jacob L, Stamatoyannopoulos, John A, Thorland, Eric, Melly, Geoff, Dykema, Philip E, MacKellar, Drew C, Gray, Hannah K, Singh, Avi, Peterson, JohnAric M, Russell, Denny, Torres, Laura Marcela, Lindquist, Scott, Bedford, Trevor, Allen, Krisandra J, Oltean, Hanna N
Published in medRxiv : the preprint server for health sciences (16.02.2022)
Published in medRxiv : the preprint server for health sciences (16.02.2022)
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Journal Article
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
Müller, Nicola F, Wagner, Cassia, Frazar, Chris D, Roychoudhury, Pavitra, Lee, Jover, Moncla, Louise H, Pelle, Benjamin, Richardson, Matthew, Ryke, Erica, Xie, Hong, Shrestha, Lasata, Addetia, Amin, Rachleff, Victoria M, Lieberman, Nicole A P, Huang, Meei-Li, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Adler, Amanda, Brandstetter, Elisabeth, Han, Peter D, Fay, Kairsten, Llcisin, Misja, Lacombe, Kristen, Sibley, Thomas R, Truong, Melissa, Wolf, Caitlin R, Boeckh, Michael, Englund, Janet A, Famulare, Michael, Lutz, Barry R, Rieder, Mark J, Thompson, Matthew, Duchin, Jeffrey S, Starita, Lea M, Chu, Helen Y, Shendure, Jay, Jerome, Keith R, Lindquist, Scott, Greninger, Alexander L, Nickerson, Deborah A, Bedford, Trevor
Published in medRxiv : the preprint server for health sciences (30.09.2020)
Published in medRxiv : the preprint server for health sciences (30.09.2020)
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Effects of weather-related social distancing on city-scale transmission of respiratory viruses: a retrospective cohort study
Jackson, Michael L, Hart, Gregory R, McCulloch, Denise J, Adler, Amanda, Brandstetter, Elisabeth, Fay, Kairsten, Han, Peter, Lacombe, Kirsten, Lee, Jover, Sibley, Thomas R, Nickerson, Deborah A, Rieder, Mark J, Starita, Lea, Englund, Janet A, Bedford, Trevor, Chu, Helen, Famulare, Michael
Published in BMC infectious diseases (09.04.2021)
Published in BMC infectious diseases (09.04.2021)
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Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study
Paredes, Miguel I, Lunn, Stephanie M, Famulare, Michael, Frisbie, Lauren A, Painter, Ian, Burstein, Roy, Roychoudhury, Pavitra, Xie, Hong, Mohamed Bakhash, Shah A, Perez, Ricardo, Lukes, Maria, Ellis, Sean, Sathees, Saraswathi, Mathias, Patrick C, Greninger, Alexander, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, McDermot, Evan, Truong, Melissa, Nickerson, Deborah A, Bates, Daniel L, Hartman, Matthew E, Haugen, Eric, Nguyen, Truong N, Richards, Joshua D, Rodriguez, Jacob L, Stamatoyannopoulos, John A, Thorland, Eric, Melly, Geoff, Dykema, Philip E, MacKellar, Drew C, Gray, Hannah K, Singh, Avi, Peterson, JohnAric M, Russell, Denny, Marcela Torres, Laura, Lindquist, Scott, Bedford, Trevor, Allen, Krisandra J, Oltean, Hanna N
Published in Clinical infectious diseases (12.04.2022)
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Published in Clinical infectious diseases (12.04.2022)
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Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences
Tran-Kiem, Cécile, Paredes, Miguel I, Perofsky, Amanda C, Frisbie, Lauren A, Xie, Hong, Kong, Kevin, Weixler, Amelia, Greninger, Alexander L, Roychoudhury, Pavitra, Peterson, JohnAric M, Delgado, Andrew, Halstead, Holly, MacKellar, Drew, Dykema, Philip, Gamboa, Luis, Frazar, Chris D, Ryke, Erica, Stone, Jeremy, Reinhart, David, Starita, Lea, Thibodeau, Allison, Yun, Cory, Aragona, Frank, Black, Allison, Viboud, Cécile, Bedford, Trevor
Published in medRxiv : the preprint server for health sciences (25.05.2024)
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Published in medRxiv : the preprint server for health sciences (25.05.2024)
Journal Article
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county
Paredes, Miguel I, Perofsky, Amanda C, Frisbie, Lauren, Moncla, Louise H, Roychoudhury, Pavitra, Xie, Hong, Mohamed Bakhash, Shah A, Kong, Kevin, Arnould, Isabel, Nguyen, Tien V, Wendm, Seffir T, Hajian, Pooneh, Ellis, Sean, Mathias, Patrick C, Greninger, Alexander L, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, Stone, Jeremy, McDermot, Evan, Truong, Melissa, Shendure, Jay, Oltean, Hanna N, Viboud, Cécile, Chu, Helen, Müller, Nicola F, Bedford, Trevor
Published in medRxiv : the preprint server for health sciences (16.12.2022)
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Published in medRxiv : the preprint server for health sciences (16.12.2022)
Journal Article
Cryptic transmission of SARS-CoV-2 in Washington State
Bedford, Trevor, Greninger, Alexander L, Roychoudhury, Pavitra, Starita, Lea M, Famulare, Michael, Huang, Meei-Li, Nalla, Arun, Pepper, Gregory, Reinhardt, Adam, Xie, Hong, Shrestha, Lasata, Nguyen, Truong N, Adler, Amanda, Brandstetter, Elisabeth, Cho, Shari, Giroux, Danielle, Han, Peter D, Fay, Kairsten, Frazar, Chris D, Ilcisin, Misja, Lacombe, Kirsten, Lee, Jover, Kiavand, Anahita, Richardson, Matthew, Sibley, Thomas R, Truong, Melissa, Wolf, Caitlin R, Nickerson, Deborah A, Rieder, Mark J, Englund, Janet A, Hadfield, James, Hodcroft, Emma B, Huddleston, John, Moncla, Louise H, Müller, Nicola F, Neher, Richard A, Deng, Xianding, Gu, Wei, Federman, Scot, Chiu, Charles, Duchin, Jeff, Gautom, Romesh, Melly, Geoff, Hiatt, Brian, Dykema, Philip, Lindquist, Scott, Queen, Krista, Tao, Ying, Uehara, Anna, Tong, Suxiang, MacCannell, Duncan, Armstrong, Gregory L, Baird, Geoffrey S, Chu, Helen Y, Shendure, Jay, Jerome, Keith R
Published in medRxiv : the preprint server for health sciences (06.04.2020)
Published in medRxiv : the preprint server for health sciences (06.04.2020)
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