A quantitative approach for measuring the reservoir of latent HIV-1 proviruses
Bruner, Katherine M, Wang, Zheng, Simonetti, Francesco R, Bender, Alexandra M, Kwon, Kyungyoon J, Sengupta, Srona, Fray, Emily J, Beg, Subul A, Antar, Annukka A R, Jenike, Katharine M, Bertagnolli, Lynn N, Capoferri, Adam A, Kufera, Joshua T, Timmons, Andrew, Nobles, Christopher, Gregg, John, Wada, Nikolas, Ho, Ya-Chi, Zhang, Hao, Margolick, Joseph B, Blankson, Joel N, Deeks, Steven G, Bushman, Frederic D, Siliciano, Janet D, Laird, Gregory M, Siliciano, Robert F
Published in Nature (London) (01.02.2019)
Published in Nature (London) (01.02.2019)
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Journal Article
The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
McMyn, Natalie F, Varriale, Joseph, Fray, Emily J, Zitzmann, Carolin, MacLeod, Hannah, Lai, Jun, Singhal, Anushka, Moskovljevic, Milica, Garcia, Mauro A, Lopez, Brianna M, Hariharan, Vivek, Rhodehouse, Kyle, Lynn, Kenneth, Tebas, Pablo, Mounzer, Karam, Montaner, Luis J, Benko, Erika, Kovacs, Colin, Hoh, Rebecca, Simonetti, Francesco R, Laird, Gregory M, Deeks, Steven G, Ribeiro, Ruy M, Perelson, Alan S, Siliciano, Robert F, Siliciano, Janet M
Published in The Journal of clinical investigation (01.09.2023)
Published in The Journal of clinical investigation (01.09.2023)
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Journal Article
Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants
Fray, Emily J., Wu, Fengting, Simonetti, Francesco R., Zitzmann, Carolin, Sambaturu, Narmada, Molina-Paris, Carmen, Bender, Alexandra M., Liu, Po-Ting, Ventura, John D., Wiseman, Roger W., O’Connor, David H., Geleziunas, Romas, Leitner, Thomas, Ribeiro, Ruy M., Perelson, Alan S., Barouch, Dan H., Siliciano, Janet D., Siliciano, Robert F.
Published in Cell host & microbe (08.03.2023)
Published in Cell host & microbe (08.03.2023)
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Journal Article
Biphasic decay of intact SHIV genomes following initiation of antiretroviral therapy complicates analysis of interventions targeting the reservoir
Kumar, Mithra R, Fray, Emily J, Bender, Alexandra M, Zitzmann, Carolin, Ribeiro, Ruy M, Perelson, Alan S, Barouch, Dan H, Siliciano, Janet D, Siliciano, Robert F
Published in Proceedings of the National Academy of Sciences - PNAS (24.10.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (24.10.2023)
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Journal Article
Therapeutic efficacy of combined active and passive immunization in ART-suppressed, SHIV-infected rhesus macaques
Walker-Sperling, Victoria E K, Mercado, Noe B, Chandrashekar, Abishek, Borducchi, Erica N, Liu, Jinyan, Nkolola, Joseph P, Lewis, Mark, Murry, Jeffrey P, Yang, Yunling, Geleziunas, Romas, Robb, Merlin L, Michael, Nelson L, Pau, Maria G, Wegmann, Frank, Schuitemaker, Hanneke, Fray, Emily J, Kumar, Mithra R, Siliciano, Janet D, Siliciano, Robert F, Barouch, Dan H
Published in Nature communications (16.06.2022)
Published in Nature communications (16.06.2022)
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Journal Article
The Landscape of Persistent Viral Genomes in ART-Treated SIV, SHIV, and HIV-2 Infections
Bender, Alexandra M., Simonetti, Francesco R., Kumar, Mithra R., Fray, Emily J., Bruner, Katherine M., Timmons, Andrew E., Tai, Katherine Y., Jenike, Katharine M., Antar, Annukka A.R., Liu, Po-Ting, Ho, Ya-Chi, Raugi, Dana N., Seydi, Moussa, Gottlieb, Geoffrey S., Okoye, Afam A., Del Prete, Gregory Q., Picker, Louis J., Mankowski, Joseph L., Lifson, Jeffrey D., Siliciano, Janet D., Laird, Greg M., Barouch, Dan H., Clements, Janice E., Siliciano, Robert F.
Published in Cell host & microbe (10.07.2019)
Published in Cell host & microbe (10.07.2019)
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Journal Article
Simian-Human Immunodeficiency Virus SHIV.C.CH505 Persistence in ART-Suppressed Infant Macaques Is Characterized by Elevated SHIV RNA in the Gut and a High Abundance of Intact SHIV DNA in Naive CD4 + T Cells
Obregon-Perko, Veronica, Bricker, Katherine M, Mensah, Gloria, Uddin, Ferzan, Kumar, Mithra R, Fray, Emily J, Siliciano, Robert F, Schoof, Nils, Horner, Anna, Mavigner, Maud, Liang, Shan, Vanderford, Thomas, Sass, Julian, Chan, Cliburn, Berendam, Stella J, Bar, Katharine J, Shaw, George M, Silvestri, Guido, Fouda, Genevieve G, Permar, Sallie R, Chahroudi, Ann
Published in Journal of virology (22.12.2020)
Published in Journal of virology (22.12.2020)
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Journal Article
TCR-mimic bispecific antibodies to target the HIV-1 reservoir
Sengupta, Srona, Board, Nathan L, Wu, Fengting, Moskovljevic, Milica, Douglass, Jacqueline, Zhang, Josephine, Reinhold, Bruce R, Duke-Cohan, Jonathan, Yu, Jeanna, Reed, Madison C, Tabdili, Yasmine, Azurmendi, Aitana, Fray, Emily J, Zhang, Hao, Hsiue, Emily Han-Chung, Jenike, Katharine, Ho, Ya-Chi, Gabelli, Sandra B, Kinzler, Kenneth W, Vogelstein, Bert, Zhou, Shibin, Siliciano, Janet D, Sadegh-Nasseri, Scheherazade, Reinherz, Ellis L, Siliciano, Robert F
Published in Proceedings of the National Academy of Sciences - PNAS (12.04.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (12.04.2022)
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Journal Article
Allogeneic immunity clears latent virus following allogeneic stem cell transplantation in SIV-infected ART-suppressed macaques
Wu, Helen L., Busman-Sahay, Kathleen, Weber, Whitney C., Waytashek, Courtney M., Boyle, Carla D., Bateman, Katherine B., Reed, Jason S., Hwang, Joseph M., Shriver-Munsch, Christine, Swanson, Tonya, Northrup, Mina, Armantrout, Kimberly, Price, Heidi, Robertson-LeVay, Mitch, Uttke, Samantha, Kumar, Mithra R., Fray, Emily J., Taylor-Brill, Sol, Bondoc, Stephen, Agnor, Rebecca, Junell, Stephanie L., Legasse, Alfred W., Moats, Cassandra, Bochart, Rachele M., Sciurba, Joseph, Bimber, Benjamin N., Sullivan, Michelle N., Dozier, Brandy, MacAllister, Rhonda P., Hobbs, Theodore R., Martin, Lauren D., Panoskaltsis-Mortari, Angela, Colgin, Lois M.A., Siliciano, Robert F., Siliciano, Janet D., Estes, Jacob D., Smedley, Jeremy V., Axthelm, Michael K., Meyers, Gabrielle, Maziarz, Richard T., Burwitz, Benjamin J., Stanton, Jeffrey J., Sacha, Jonah B.
Published in Immunity (Cambridge, Mass.) (11.07.2023)
Published in Immunity (Cambridge, Mass.) (11.07.2023)
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Journal Article
Persistence of viral RNA in lymph nodes in ART-suppressed SIV/SHIV-infected Rhesus Macaques
Cadena, Anthony M, Ventura, John D, Abbink, Peter, Borducchi, Erica N, Tuyishime, Hubert, Mercado, Noe B, Walker-Sperling, Victoria, Siamatu, Mazuba, Liu, Po-Ting, Chandrashekar, Abishek, Nkolola, Joseph P, McMahan, Katherine, Kordana, Nicole, Hamza, Venous, Bondzie, Esther A, Fray, Emily, Kumar, Mithra, Fischinger, Stephanie, Shin, Sally A, Lewis, Mark G, Siliciano, Robert F, Alter, Galit, Barouch, Dan H
Published in Nature communications (05.03.2021)
Published in Nature communications (05.03.2021)
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Journal Article
Assessing the impact of autologous virus neutralizing antibodies on viral rebound time in postnatally SHIV-infected ART-treated infant rhesus macaques
Mainou, Ellie, Berendam, Stella J., Obregon-Perko, Veronica, Uffman, Emilie A., Phan, Caroline T., Shaw, George M., Bar, Katharine J., Kumar, Mithra R., Fray, Emily J., Siliciano, Janet M., Siliciano, Robert F., Silvestri, Guido, Permar, Sallie R., Fouda, Genevieve G., McCarthy, Janice, Chahroudi, Ann, Conway, Jessica M., Chan, Cliburn
Published in Epidemics (01.09.2024)
Published in Epidemics (01.09.2024)
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Journal Article
CD8 + lymphocytes do not impact SIV reservoir establishment under ART
Statzu, Maura, Jin, Wang, Fray, Emily J, Wong, Andrew Kam Ho, Kumar, Mithra R, Ferrer, Elizabeth, Docken, Steffen S, Pinkevych, Mykola, McBrien, Julia B, Fennessey, Christine M, Keele, Brandon F, Liang, Shan, Harper, Justin L, Mutascio, Simona, Franchitti, Lavinia, Wang, Hong, Cicetti, Davide, Bosinger, Steven E, Carnathan, Diane G, Vanderford, Thomas H, Margolis, David M, Garcia-Martinez, J Victor, Chahroudi, Ann, Paiardini, Mirko, Siliciano, Janet, Davenport, Miles P, Kulpa, Deanna A, Siliciano, Robert S, Silvestri, Guido
Published in Nature microbiology (01.02.2023)
Published in Nature microbiology (01.02.2023)
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Journal Article
Therapeutic efficacy of an Ad26/MVA vaccine with SIV gp140 protein and vesatolimod in ART-suppressed rhesus macaques
Ventura, John D, Nkolola, Joseph P, Chandrashekar, Abishek, Borducchi, Erica N, Liu, Jinyan, Mercado, Noe B, Hope, David L, Giffin, Victoria M, McMahan, Katherine, Geleziunas, Romas, Murry, Jeffrey P, Yang, Yunling, Lewis, Mark G, Pau, Maria G, Wegmann, Frank, Schuitemaker, Hanneke, Fray, Emily J, Kumar, Mithra R, Siliciano, Janet D, Siliciano, Robert F, Robb, Merlin L, Michael, Nelson L, Barouch, Dan H
Published in npj vaccines (18.05.2022)
Published in npj vaccines (18.05.2022)
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Journal Article
HSF1 inhibition attenuates HIV-1 latency reversal mediated by several candidate LRAs In Vitro and Ex Vivo
Timmons, Andrew, Fray, Emily, Kumar, Mithra, Wu, Fengting, Dai, Weiwei, Bullen, Cynthia Korin, Kim, Peggy, Hetzel, Carrie, Yang, Chao, Beg, Subul, Lai, Jun, Pomerantz, Joel L., Yukl, Steven A., Siliciano, Janet D., Siliciano, Robert F.
Published in Proceedings of the National Academy of Sciences - PNAS (07.07.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (07.07.2020)
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Journal Article
Induction of durable remission by dual immunotherapy in SHIV-infected ART-suppressed macaques
Lim, So-Yon, Lee, Jina, Osuna, Christa E, Vikhe, Pratik, Schalk, Dane R, Chen, Elsa, Fray, Emily, Kumar, Mithra, Schultz-Darken, Nancy, Rakasz, Eva, Capuano, Saverio, Ladd, Ruby A, Gil, Hwi Min, Evans, David T, Jeng, Emily K, Seaman, Michael, Martin, Malcolm, Van Dorp, Christiaan, Perelson, Alan S, Wong, Hing C, Siliciano, Janet D, Siliciano, Robert, Safrit, Jeffrey T, Nixon, Douglas F, Soon-Shiong, Patrick, Nussenzweig, Michel, Whitney, James B
Published in Science (American Association for the Advancement of Science) (08.03.2024)
Published in Science (American Association for the Advancement of Science) (08.03.2024)
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Journal Article
Allogeneic immunity clears latent virus following allogeneic stem cell transplantation in SIV-infected anti-retroviral therapy-suppressed macaques
Wu, Helen L., Busman-Sahay, Kathleen, Weber, Whitney C., Waytashek, Courtney M., Boyle, Carla D., Bateman, Katherine B., Reed, Jason S., Hwang, Joseph M., Shriver-Munsch, Christine, Swanson, Tonya, Northrup, Mina, Armantrout, Kimberly, Price, Heidi, Robertson-LeVay, Mitch, Uttke, Samantha, Kumar, Mithra R., Fray, Emily J., Taylor-Brill, Sol, Bondoc, Stephen, Agnor, Rebecca, Junell, Stephanie L., Legasse, Alfred W., Moats, Cassandra, Bochart, Rachele M., Sciurba, Joseph, Bimber, Benjamin N., Sullivan, Michelle N., Dozier, Brandy, MacAllister, Rhonda P., Hobbs, Theodore R., Martin, Lauren D., Panoskaltsis-Mortari, Angela, Colgin, Lois M.A., Siliciano, Robert F., Siliciano, Janet D., Estes, Jacob D., Smedley, Jeremy V., Axthelm, Michael K., Meyers, Gabrielle, Maziarz, Richard T., Burwitz, Benjamin J., Stanton, Jeffrey J., Sacha, Jonah B.
Published in Immunity (Cambridge, Mass.) (25.05.2023)
Published in Immunity (Cambridge, Mass.) (25.05.2023)
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Journal Article
A novel quantitative approach for measuring the reservoir of latent HIV-1 proviruses
Bruner, Katherine M., Wang, Zheng, Simonetti, Francesco R., Bender, Alexandra M., Kwon, Kyungyoon J., Sengupta, Srona, Fray, Emily J., Beg, Subul A., Antar, Annukka A. R., Jenike, Katharine M., Bertagnolli, Lynn N., Capoferri, Adam A., Kufera, Joshua T., Timmons, Andrew, Nobles, Christopher, Gregg, John, Wada, Nikolas, Ho, Ya-Chi, Zhang, Hao, Margolick, Joseph B., Blankson, Joel N., Deeks, Steven G., Bushman, Frederic D., Siliciano, Janet D., Laird, Gregory M., Siliciano, Robert F.
Published in Nature (London) (30.01.2019)
Published in Nature (London) (30.01.2019)
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Journal Article
Last in first out: SIV proviruses seeded later in infection are harbored in short-lived CD4 + T cells
Sambaturu, Narmada, Fray, Emily J, Wu, Fengting, Zitzmann, Carolin, Simonetti, Francesco R, Barouch, Dan H, Siliciano, Janet D, Siliciano, Robert F, Ribeiro, Ruy M, Perelson, Alan S, Molina-París, Carmen, Leitner, Thomas
Published in bioRxiv : the preprint server for biology (03.11.2023)
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Published in bioRxiv : the preprint server for biology (03.11.2023)
Journal Article
Assessing the impact of autologous neutralizing antibodies on rebound dynamics in postnatally SHIV-infected ART-treated infant rhesus macaques
Mainou, Ellie, Berendam, Stella J, Obregon-Perko, Veronica, Uffman, Emilie A, Phan, Caroline T, Shaw, George M, Bar, Katharine J, Kumar, Mithra R, Fray, Emily J, Siliciano, Janet M, Siliciano, Robert F, Silvestri, Guido, Permar, Sallie R, Fouda, Genevieve G, McCarthy, Janice, Chahroudi, Ann, Chan, Cliburn, Conway, Jessica M
Published in bioRxiv (03.06.2024)
Published in bioRxiv (03.06.2024)
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Journal Article
Comparative Analysis of Within-Host Dynamics of Acute Infection and Viral Rebound Dynamics in Postnatally SHIV-Infected ART-Treated Infant Rhesus Macaques
Mainou, Ellie, Berendam, Stella J, Obregon-Perko, Veronica, Uffman, Emilie A, Phan, Caroline T, Shaw, George M, Bar, Katharine J, Kumar, Mithra R, Fray, Emily J, Siliciano, Janet M, Siliciano, Robert F, Silvestri, Guido, Permar, Sallie R, Fouda, Genevieve G, McCarthy, Janice, Chahroudi, Ann, Chan, Cliburn, Conway, Jessica M
Published in bioRxiv : the preprint server for biology (23.05.2024)
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Published in bioRxiv : the preprint server for biology (23.05.2024)
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