Transcription factories: genetic programming in three dimensions
Edelman, Lucas Brandon, Fraser, Peter
Published in Current opinion in genetics & development (01.04.2012)
Published in Current opinion in genetics & development (01.04.2012)
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Cell-cycle dynamics of chromosomal organization at single-cell resolution
Nagano, Takashi, Lubling, Yaniv, Várnai, Csilla, Dudley, Carmel, Leung, Wing, Baran, Yael, Mendelson Cohen, Netta, Wingett, Steven, Fraser, Peter, Tanay, Amos
Published in Nature (London) (06.07.2017)
Published in Nature (London) (06.07.2017)
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Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
Wutz, Gordana, Várnai, Csilla, Nagasaka, Kota, Cisneros, David A, Stocsits, Roman R, Tang, Wen, Schoenfelder, Stefan, Jessberger, Gregor, Muhar, Matthias, Hossain, M Julius, Walther, Nike, Koch, Birgit, Kueblbeck, Moritz, Ellenberg, Jan, Zuber, Johannes, Fraser, Peter, Peters, Jan‐Michael
Published in The EMBO journal (15.12.2017)
Published in The EMBO journal (15.12.2017)
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CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Cairns, Jonathan, Freire-Pritchett, Paula, Wingett, Steven W, Várnai, Csilla, Dimond, Andrew, Plagnol, Vincent, Zerbino, Daniel, Schoenfelder, Stefan, Javierre, Biola-Maria, Osborne, Cameron, Fraser, Peter, Spivakov, Mikhail
Published in Genome Biology (15.06.2016)
Published in Genome Biology (15.06.2016)
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Parental-to-embryo switch of chromosome organization in early embryogenesis
Collombet, Samuel, Ranisavljevic, Noémie, Nagano, Takashi, Varnai, Csilla, Shisode, Tarak, Leung, Wing, Piolot, Tristan, Galupa, Rafael, Borensztein, Maud, Servant, Nicolas, Fraser, Peter, Ancelin, Katia, Heard, Edith
Published in Nature (London) (01.04.2020)
Published in Nature (London) (01.04.2020)
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Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation
Siersbæk, Rasmus, Madsen, Jesper Grud Skat, Javierre, Biola Maria, Nielsen, Ronni, Bagge, Emilie Kristine, Cairns, Jonathan, Wingett, Steven William, Traynor, Sofie, Spivakov, Mikhail, Fraser, Peter, Mandrup, Susanne
Published in Molecular cell (04.05.2017)
Published in Molecular cell (04.05.2017)
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Genome-wide mapping of long-range contacts unveils clustering of DNA double-strand breaks at damaged active genes
Aymard, François, Aguirrebengoa, Marion, Guillou, Emmanuelle, Javierre, Biola M, Bugler, Beatrix, Arnould, Coline, Rocher, Vincent, Iacovoni, Jason S, Biernacka, Anna, Skrzypczak, Magdalena, Ginalski, Krzysztof, Rowicka, Maga, Fraser, Peter, Legube, Gaëlle
Published in Nature structural & molecular biology (01.04.2017)
Published in Nature structural & molecular biology (01.04.2017)
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Comparison of Hi-C results using in-solution versus in-nucleus ligation
Nagano, Takashi, Várnai, Csilla, Schoenfelder, Stefan, Javierre, Biola-Maria, Wingett, Steven W, Fraser, Peter
Published in Genome Biology (26.08.2015)
Published in Genome Biology (26.08.2015)
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Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours
Harewood, Louise, Kishore, Kamal, Eldridge, Matthew D, Wingett, Steven, Pearson, Danita, Schoenfelder, Stefan, Collins, V Peter, Fraser, Peter
Published in Genome Biology (27.06.2017)
Published in Genome Biology (27.06.2017)
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The transcriptional interactome: gene expression in 3D
Schoenfelder, Stefan, Clay, Ieuan, Fraser, Peter
Published in Current opinion in genetics & development (01.04.2010)
Published in Current opinion in genetics & development (01.04.2010)
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Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation
Rubin, Adam J, Barajas, Brook C, Furlan-Magaril, Mayra, Lopez-Pajares, Vanessa, Mumbach, Maxwell R, Howard, Imani, Kim, Daniel S, Boxer, Lisa D, Cairns, Jonathan, Spivakov, Mikhail, Wingett, Steven W, Shi, Minyi, Zhao, Zhixin, Greenleaf, William J, Kundaje, Anshul, Snyder, Michael, Chang, Howard Y, Fraser, Peter, Khavari, Paul A
Published in Nature genetics (01.10.2017)
Published in Nature genetics (01.10.2017)
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Global Reorganization of the Nuclear Landscape in Senescent Cells
Chandra, Tamir, Ewels, Philip Andrew, Schoenfelder, Stefan, Furlan-Magaril, Mayra, Wingett, Steven William, Kirschner, Kristina, Thuret, Jean-Yves, Andrews, Simon, Fraser, Peter, Reik, Wolf
Published in Cell reports (Cambridge) (03.02.2015)
Published in Cell reports (Cambridge) (03.02.2015)
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Active and repressed biosynthetic gene clusters have spatially distinct chromosome states
Nützmann, Hans-Wilhelm, Doerr, Daniel, Ramírez-Colmenero, América, Sotelo-Fonseca, Jesús Emiliano, Wegel, Eva, Di Stefano, Marco, Wingett, Steven W., Fraser, Peter, Hurst, Laurence, Fernandez-Valverde, Selene L., Osbourn, Anne
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2020)
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Highly interconnected enhancer communities control lineage-determining genes in human mesenchymal stem cells
Madsen, Jesper G S, Madsen, Maria S, Rauch, Alexander, Traynor, Sofie, Van Hauwaert, Elvira L, Haakonsson, Anders K, Javierre, Biola M, Hyldahl, Mette, Fraser, Peter, Mandrup, Susanne
Published in Nature genetics (01.11.2020)
Published in Nature genetics (01.11.2020)
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HiCUP: pipeline for mapping and processing Hi-C data [version 1; peer review: 2 approved, 1 approved with reservations]
Wingett, Steven W, Ewels, Philip, Furlan-Magaril, Mayra, Nagano, Takashi, Schoenfelder, Stefan, Fraser, Peter, Andrews, Simon
Published in F1000 research (2015)
Published in F1000 research (2015)
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Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis
Yang, Jing, McGovern, Amanda, Martin, Paul, Duffus, Kate, Ge, Xiangyu, Zarrineh, Peyman, Morris, Andrew P, Adamson, Antony, Fraser, Peter, Rattray, Magnus, Eyre, Stephen
Published in Nature communications (02.09.2020)
Published in Nature communications (02.09.2020)
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Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
Dryden, Nicola H, Broome, Laura R, Dudbridge, Frank, Johnson, Nichola, Orr, Nick, Schoenfelder, Stefan, Nagano, Takashi, Andrews, Simon, Wingett, Steven, Kozarewa, Iwanka, Assiotis, Ioannis, Fenwick, Kerry, Maguire, Sarah L, Campbell, James, Natrajan, Rachael, Lambros, Maryou, Perrakis, Eleni, Ashworth, Alan, Fraser, Peter, Fletcher, Olivia
Published in Genome research (01.11.2014)
Published in Genome research (01.11.2014)
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