The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
Vizcaíno, Juan Antonio, Côté, Richard G, Csordas, Attila, Dianes, José A, Fabregat, Antonio, Foster, Joseph M, Griss, Johannes, Alpi, Emanuele, Birim, Melih, Contell, Javier, O'Kelly, Gavin, Schoenegger, Andreas, Ovelleiro, David, Pérez-Riverol, Yasset, Reisinger, Florian, Ríos, Daniel, Wang, Rui, Hermjakob, Henning
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
guide to the Proteomics Identifications Database proteomics data repository
Vizcaíno, Juan Antonio, Côté, Richard, Reisinger, Florian, Foster, Joseph M, Mueller, Michael, Rameseder, Jonathan, Hermjakob, Henning, Martens, Lennart
Published in Proteomics (Weinheim) (01.09.2009)
Published in Proteomics (Weinheim) (01.09.2009)
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Journal Article
PRIDE Cluster: building a consensus of proteomics data
Griss, Johannes, Foster, Joseph M, Hermjakob, Henning, Vizcaíno, Juan Antonio
Published in Nature methods (01.02.2013)
Published in Nature methods (01.02.2013)
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Journal Article
Genomic complexity of urothelial bladder cancer revealed in urinary cfDNA
Togneri, Fiona S, Ward, Douglas G, Foster, Joseph M, Devall, Adam J, Wojtowicz, Paula, Alyas, Sofia, Vasques, Fabiana Ramos, Oumie, Assa, James, Nicholas D, Cheng, K K, Zeegers, Maurice P, Deshmukh, Nayneeta, O'Sullivan, Brendan, Taniere, Philippe, Spink, Karen G, McMullan, Dominic J, Griffiths, Mike, Bryan, Richard T
Published in European journal of human genetics : EJHG (01.08.2016)
Published in European journal of human genetics : EJHG (01.08.2016)
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Journal Article
LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics
Foster, Joseph M, Moreno, Pablo, Fabregat, Antonio, Hermjakob, Henning, Steinbeck, Christoph, Apweiler, Rolf, Wakelam, Michael J O, Vizcaíno, Juan Antonio
Published in PloS one (07.05.2013)
Published in PloS one (07.05.2013)
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Journal Article
PRIDE Inspector: a tool to visualize and validate MS proteomics data
Wang, Rui, Fabregat, Antonio, Ríos, Daniel, Ovelleiro, David, Foster, Joseph M, Côté, Richard G, Griss, Johannes, Csordas, Attila, Perez-Riverol, Yasset, Reisinger, Florian, Hermjakob, Henning, Martens, Lennart, Vizcaíno, Juan Antonio
Published in Nature biotechnology (01.02.2012)
Published in Nature biotechnology (01.02.2012)
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Journal Article
Chromatographic retention time prediction for posttranslationally modified peptides
Moruz, Luminita, Staes, An, Foster, Joseph M., Hatzou, Maria, Timmerman, Evy, Martens, Lennart, Käll, Lukas
Published in Proteomics (Weinheim) (01.04.2012)
Published in Proteomics (Weinheim) (01.04.2012)
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Journal Article
HER2 overexpression and amplification as a potential therapeutic target in colorectal cancer: analysis of 3256 patients enrolled in the QUASAR, FOCUS and PICCOLO colorectal cancer trials
Richman, Susan D, Southward, Katie, Chambers, Philip, Cross, Debra, Barrett, Jennifer, Hemmings, Gemma, Taylor, Morag, Wood, Henry, Hutchins, Gordon, Foster, Joseph M, Oumie, Assa, Spink, Karen G, Brown, Sarah R, Jones, Marc, Kerr, David, Handley, Kelly, Gray, Richard, Seymour, Matthew, Quirke, Philip
Published in The Journal of pathology (01.03.2016)
Published in The Journal of pathology (01.03.2016)
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Journal Article
Proteomics Identifications database: 2010 update
Vizcaíno, Juan Antonio, Côté, Richard, Reisinger, Florian, Barsnes, Harald, Foster, Joseph M, Rameseder, Jonathan, Hermjakob, Henning, Martens, Lennart
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
Cross-laboratory validation of the OncoScan® FFPE Assay, a multiplex tool for whole genome tumour profiling
Foster, Joseph M, Oumie, Assa, Togneri, Fiona S, Vasques, Fabiana Ramos, Hau, Debra, Taylor, Morag, Tinkler-Hundal, Emma, Southward, Katie, Medlow, Paul, McGreeghan-Crosby, Keith, Halfpenny, Iris, McMullan, Dominic J, Quirke, Phil, Keating, Katherine E, Griffiths, Mike, Spink, Karen G, Brew, Fiona
Published in BMC medical genomics (18.02.2015)
Published in BMC medical genomics (18.02.2015)
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Journal Article
A posteriori quality control for the curation and reuse of public proteomics data
Foster, Joseph M., Degroeve, Sven, Gatto, Laurent, Visser, Matthieu, Wang, Rui, Griss, Johannes, Apweiler, Rolf, Martens, Lennart
Published in Proteomics (Weinheim) (01.06.2011)
Published in Proteomics (Weinheim) (01.06.2011)
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Journal Article
Comparing mutation calls in fixed tumour samples between the affymetrix OncoScan® array and PCR based next-generation sequencing
Wood, Henry M, Foster, Joseph M, Taylor, Morag, Tinkler-Hundal, Emma, Togneri, Fiona S, Wojtowicz, Paula, Oumie, Assa, Spink, Karen G, Brew, Fiona, Quirke, Philip
Published in BMC medical genomics (18.03.2017)
Published in BMC medical genomics (18.03.2017)
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Journal Article
Abstract 626: Cross-site reproducibility and orthogonal validation of copy number and somatic mutation calls of OncoScan® FFPE Assay Kit in solid tumors
Foster, Joseph M., Oumie, Assa, Togneri, Fiona S., Taylor, Morag, Alyas, Sofia, Wojtowicz, Paula, Wood, Henry, Tinkler-Hundal, Emma, Southward, Katie, McMullan, Dominic, Quirke, Phil, Keating, Katherine E., Griffiths, Mike, Spink, Karen G., Brew, Fiona, Fung, Eric, Schmidt, Jeanette
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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