Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
Fortriede, Joshua D, Pells, Troy J, Chu, Stanley, Chaturvedi, Praneet, Wang, DongZhuo, Fisher, Malcom E, James-Zorn, Christina, Wang, Ying, Nenni, Mardi J, Burns, Kevin A, Lotay, Vaneet S, Ponferrada, Virgilio G, Karimi, Kamran, Zorn, Aaron M, Vize, Peter D
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
Get full text
Journal Article
Xenbase: Facilitating the Use of Xenopus to Model Human Disease
Nenni, Mardi J, Fisher, Malcolm E, James-Zorn, Christina, Pells, Troy J, Ponferrada, Virgilio, Chu, Stanley, Fortriede, Joshua D, Burns, Kevin A, Wang, Ying, Lotay, Vaneet S, Wang, Dong Zhou, Segerdell, Erik, Chaturvedi, Praneet, Karimi, Kamran, Vize, Peter D, Zorn, Aaron M
Published in Frontiers in physiology (26.02.2019)
Published in Frontiers in physiology (26.02.2019)
Get full text
Journal Article
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development
Fisher, Malcolm E, Segerdell, Erik, Matentzoglu, Nicolas, Nenni, Mardi J, Fortriede, Joshua D, Chu, Stanley, Pells, Troy J, Osumi-Sutherland, David, Chaturvedi, Praneet, James-Zorn, Christina, Sundararaj, Nivitha, Lotay, Vaneet S, Ponferrada, Virgilio, Wang, Dong Zhuo, Kim, Eugene, Agalakov, Sergei, Arshinoff, Bradley I, Karimi, Kamran, Vize, Peter D, Zorn, Aaron M
Published in BMC bioinformatics (22.03.2022)
Published in BMC bioinformatics (22.03.2022)
Get full text
Journal Article
Xenbase: Core features, data acquisition, and data processing
James-Zorn, Christina, Ponferrada, Virgillio G., Burns, Kevin A., Fortriede, Joshua D., Lotay, Vaneet S., Liu, Yu, Brad Karpinka, J., Karimi, Kamran, Zorn, Aaron M., Vize, Peter D.
Published in Genesis (New York, N.Y. : 2000) (01.08.2015)
Published in Genesis (New York, N.Y. : 2000) (01.08.2015)
Get full text
Journal Article
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase
Segerdell, Erik, Ponferrada, Virgilio G, James-Zorn, Christina, Burns, Kevin A, Fortriede, Joshua D, Dahdul, Wasila M, Vize, Peter D, Zorn, Aaron M
Published in Journal of biomedical semantics (18.10.2013)
Published in Journal of biomedical semantics (18.10.2013)
Get full text
Journal Article
Xenbase: a genomic, epigenomic and transcriptomic model organism database
Karimi, Kamran, Fortriede, Joshua D, Lotay, Vaneet S, Burns, Kevin A, Wang, Dong Zhou, Fisher, Malcom E, Pells, Troy J, James-Zorn, Christina, Wang, Ying, Ponferrada, V G, Chu, Stanley, Chaturvedi, Praneet, Zorn, Aaron M, Vize, Peter D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
Get full text
Journal Article
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes
Karpinka, J Brad, Fortriede, Joshua D, Burns, Kevin A, James-Zorn, Christina, Ponferrada, Virgilio G, Lee, Jacqueline, Karimi, Kamran, Zorn, Aaron M, Vize, Peter D
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
Get full text
Journal Article
The Xenopus ORFeome: A resource that enables functional genomics
Grant, Ian M., Balcha, Dawit, Hao, Tong, Shen, Yun, Trivedi, Prasad, Patrushev, Ilya, Fortriede, Joshua D., Karpinka, John B., Liu, Limin, Zorn, Aaron M., Stukenberg, P. Todd, Hill, David E., Gilchrist, Michael J.
Published in Developmental biology (15.12.2015)
Published in Developmental biology (15.12.2015)
Get full text
Journal Article
Clustered Xenopus keratin genes: A genomic, transcriptomic, and proteomic analysis
Suzuki, Ken-ichi T., Suzuki, Miyuki, Shigeta, Mitsuki, Fortriede, Joshua D., Takahashi, Shuji, Mawaribuchi, Shuuji, Yamamoto, Takashi, Taira, Masanori, Fukui, Akimasa
Published in Developmental biology (15.06.2017)
Published in Developmental biology (15.06.2017)
Get full text
Journal Article
Guidelines for reporting cell types: the MIRACL standard
Lubiana, Tiago, Roncaglia, Paola, Mungall, Christopher J, Quardokus, Ellen M, Fortriede, Joshua D, Osumi-Sutherland, David, Diehl, Alexander D
Year of Publication 18.04.2022
Year of Publication 18.04.2022
Get full text
Journal Article