3D genomic mapping reveals multifocality of human pancreatic precancers
Braxton, Alicia M., Kiemen, Ashley L., Grahn, Mia P., Forjaz, André, Parksong, Jeeun, Mahesh Babu, Jaanvi, Lai, Jiaying, Zheng, Lily, Niknafs, Noushin, Jiang, Liping, Cheng, Haixia, Song, Qianqian, Reichel, Rebecca, Graham, Sarah, Damanakis, Alexander I., Fischer, Catherine G., Mou, Stephanie, Metz, Cameron, Granger, Julie, Liu, Xiao-Ding, Bachmann, Niklas, Zhu, Yutong, Liu, YunZhou, Almagro-Pérez, Cristina, Jiang, Ann Chenyu, Yoo, Jeonghyun, Kim, Bridgette, Du, Scott, Foster, Eli, Hsu, Jocelyn Y., Rivera, Paula Andreu, Chu, Linda C., Liu, Fengze, Fishman, Elliot K., Yuille, Alan, Roberts, Nicholas J., Thompson, Elizabeth D., Scharpf, Robert B., Cornish, Toby C., Jiao, Yuchen, Karchin, Rachel, Hruban, Ralph H., Wu, Pei-Hsun, Wirtz, Denis, Wood, Laura D.
Published in Nature (London) (16.05.2024)
Published in Nature (London) (16.05.2024)
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PanIN or IPMN? Redefining Lesion Size in 3 Dimensions
Kiemen, Ashley L, Dequiedt, Lucie, Shen, Yu, Zhu, Yutong, Matos-Romero, Valentina, Forjaz, André, Campbell, Kurtis, Dhana, Will, Cornish, Toby, Braxton, Alicia M, Wu, Pei-Hsun, Fishman, Elliot K, Wood, Laura D, Wirtz, Denis, Hruban, Ralph H
Published in The American journal of surgical pathology (01.07.2024)
Published in The American journal of surgical pathology (01.07.2024)
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Magnetic Resonance Imaging-Based Assessment of Pancreatic Fat Strongly Correlates With Histology-Based Assessment of Pancreas Composition
Kiemen, Ashley L, Dbouk, Mohamad, Diwan, Elizabeth Abou, Forjaz, André, Dequiedt, Lucie, Baghdadi, Azarakhsh, Madani, Seyedeh Panid, Grahn, Mia P, Jones, Craig, Vedula, Swaroop, Wu, PeiHsun, Wirtz, Denis, Kern, Scott, Goggins, Michael, Hruban, Ralph H, Kamel, Ihab R, Canto, Marcia Irene
Published in Pancreas (01.02.2024)
Published in Pancreas (01.02.2024)
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3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure
Kiemen, Ashley L, Almagro-Pérez, Cristina, Matos, Valentina, Forjaz, Andre, Braxton, Alicia M, Dequiedt, Lucie, Parksong, Jeeun, Cannon, Courtney D, Yuan, Xuan, Shin, Sarah M, Babu, Jaanvi Mahesh, Thompson, Elizabeth D, Cornish, Toby C, Ho, Won Jin, Wood, Laura D, Wu, Pei-Hsun, Barrutia, Arrate Muñoz, Hruban, Ralph H, Wirtz, Denis
Published in bioRxiv (06.08.2024)
Published in bioRxiv (06.08.2024)
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Abstract 6092: Three-dimensional multi-omic analysis of early invasion of human pancreatic ductal adenocarcinoma from IPMN
Datta, Shalini, Shin, Sarah M., Kanacharoen, Jessie, Pflüger, Michael Johannes, Hirose, Katsuya, Forjaz, André, Graham, Sarah, Wu, Pei-Hsun, Hruban, Ralph H., Wirtz, Denis, Ho, Won Jin, Kiemen, Ashley L., Wood, Laura D.
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Combined assembloid modeling and 3D whole-organ mapping captures the microanatomy and function of the human fallopian tube
Crawford, Ashleigh J, Forjaz, André, Bons, Joanna, Bhorkar, Isha, Roy, Triya, Schell, David, Queiroga, Vasco, Ren, Kehan, Kramer, Donald, Huang, Wilson, Russo, Gabriella C, Lee, Meng-Horng, Wu, Pei-Hsun, Shih, Ie-Ming, Wang, Tian-Li, Atkinson, Mark A, Schilling, Birgit, Kiemen, Ashley L, Wirtz, Denis
Published in Science advances (27.09.2024)
Published in Science advances (27.09.2024)
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Abstract B032: Spatial proteomics and transcriptomics reveal early immune cell organization in human pancreatic intraepithelial neoplasia
Lyman, Melissa R., Mitchell, Jacob T., Kagohara, Luciane T., Huff, Amanda L., Haldar, Daniel, Shin, Sarah, Guinn, Samantha, Barrett, Benjamin, Longway, Gabriella, Hernandez, Alexei, Coyne, Erin, Yuan, Xuan, Andaloori, Lalitya, Lai, Jiaying, Liu, YunZhou, Karchin, Rachel, Gupta, Anuj, Kiemen, Ashley, Forjaz, André, Wirtz, Denis, Wu, Pei-Hsun, Deshpande, Atul, Armstrong, Todd, Azad, Nilofer S., Thompson, Elizabeth, Anders, Robert, Ho, Won Jin, Jaffee, Elizabeth, Fertig, Elana, Zaidi, Neeha
Published in Cancer research (Chicago, Ill.) (16.01.2024)
Published in Cancer research (Chicago, Ill.) (16.01.2024)
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Three-dimensional reconstruction of fetal rhesus macaque kidneys at single-cell resolution reveals complex inter-relation of structures
Dequiedt, Lucie, Forjaz, André, Lo, Jamie O, McCarty, Owen, Wu, Pei-Hsun, Rosenberg, Avi, Wirtz, Denis, Kiemen, Ashley
Published in bioRxiv (03.04.2024)
Published in bioRxiv (03.04.2024)
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Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping
Joshi, Saurabh, Forjaz, André, Han, Kyu Sang, Shen, Yu, Queiroga, Vasco, Xenes, Daniel, Matelsk, Jordan, Wester, Brock, Barrutia, Arrate Munoz, Kiemen, Ashley L, Wu, Pei-Hsun, Wirtz, Denis
Published in bioRxiv : the preprint server for biology (28.03.2024)
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Published in bioRxiv : the preprint server for biology (28.03.2024)
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Three-dimensional assessments are necessary to determine the true, spatially-resolved composition of tissues
Forjaz, André, Vaz, Eduarda, Romero, Valentina Matos, Joshi, Saurabh, Braxton, Alicia M, Jiang, Ann C, Fujikura, Kohei, Cornish, Toby, Hong, Seung-Mo, Hruban, Ralph H, Wu, Pei-Hsun, Wood, Laura D, Kiemen, Ashley L, Wirtz, Denis
Published in bioRxiv : the preprint server for biology (28.03.2024)
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Published in bioRxiv : the preprint server for biology (28.03.2024)
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High-motility pro-tumorigenic monocytes drive macrophage enrichment in the tumor microenvironment
Du, Wenxuan, Zhou, Bryan, Forjaz, André, Shin, Sarah M, Wu, Fan, Crawford, Ashleigh J, Nair, Praful R, Johnston, Adrian C, West-Foyle, Hoku, Tang, Ashley, Kim, Dongjoo, Fan, Rong, Kiemen, Ashley L, Wu, Pei-Hsun, Phillip, Jude M, Ho, Won Jin, Sanin, David E, Wirtz, Denis
Published in bioRxiv (18.07.2024)
Published in bioRxiv (18.07.2024)
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A TBX5-dependent compartment boundary patterns the cardiac interventricular septum
Kathiriya, Irfan S, Dominguez, Martin H, Rao, Kavitha S, Muncie-Vasic, Jonathon M, Devine, W Patrick, Hu, Kevin M, Hota, Swetansu K, Garay, Bayardo I, Quintero, Diego, Goyal, Piyush, Matthews, Megan N, Thomas, Reuben, Sukonnik, Tatyana, Miguel-Perez, Dario, Winchester, Sarah, Brower, Emily F, Forjaz, André, Wu, Pei-Hsun, Wirtz, Denis, Kiemen, Ashley L, Bruneau, Benoit G
Published in bioRxiv : the preprint server for biology (05.02.2024)
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Published in bioRxiv : the preprint server for biology (05.02.2024)
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Engineering self-propelled tumor-infiltrating CAR T cells using synthetic velocity receptors
Johnston, Adrian C, Alicea, Gretchen M, Lee, Cameron C, Patel, Payal V, Hanna, Eban A, Vaz, Eduarda, Forjaz, André, Wan, Zeqi, Nair, Praful R, Lim, Yeongseo, Chen, Tina, Du, Wenxuan, Kim, Dongjoo, Nichakawade, Tushar D, Rebecca, Vito W, Bonifant, Challice L, Fan, Rong, Kiemen, Ashley L, Wu, Pei-Hsun, Wirtz, Denis
Published in bioRxiv : the preprint server for biology (04.01.2024)
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Published in bioRxiv : the preprint server for biology (04.01.2024)
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Precision-engineered biomimetics: the human fallopian tube
Crawford, Ashleigh J, Forjaz, André, Bhorkar, Isha, Roy, Triya, Schell, David, Queiroga, Vasco, Ren, Kehan, Kramer, Donald, Bons, Joanna, Huang, Wilson, Russo, Gabriella C, Lee, Meng-Horng, Schilling, Birgit, Wu, Pei-Hsun, Shih, Ie-Ming, Wang, Tian-Li, Kiemen, Ashley, Wirtz, Denis
Published in bioRxiv : the preprint server for biology (07.06.2023)
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Published in bioRxiv : the preprint server for biology (07.06.2023)
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Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
Johnson, Jeanette A I, Stein-O'Brien, Genevieve L, Booth, Max, Heiland, Randy, Kurtoglu, Furkan, Bergman, Daniel R, Bucher, Elmar, Deshpande, Atul, Forjaz, André, Getz, Michael, Godet, Ines, Lyman, Melissa, Metzcar, John, Mitchell, Jacob, Raddatz, Andrew, Rocha, Heber, Solorzano, Jacobo, Sundus, Aneequa, Wang, Yafei, Gilkes, Danielle, Kagohara, Luciane T, Kiemen, Ashley L, Thompson, Elizabeth D, Wirtz, Denis, Wu, Pei-Hsun, Zaidi, Neeha, Zheng, Lei, Zimmerman, Jacquelyn W, Jaffee, Elizabeth M, Hwan Chang, Young, Coussens, Lisa M, Gray, Joe W, Heiser, Laura M, Fertig, Elana J, Macklin, Paul
Published in bioRxiv (05.11.2023)
Published in bioRxiv (05.11.2023)
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Three-dimensional genomic mapping of human pancreatic tissue reveals striking multifocality and genetic heterogeneity in precancerous lesions
Braxton, Alicia M, Kiemen, Ashley L, Grahn, Mia P, Forjaz, André, Babu, Jaanvi Mahesh, Zheng, Lily, Jiang, Liping, Cheng, Haixia, Song, Qianqian, Reichel, Rebecca, Graham, Sarah, Damanakis, Alexander I, Fischer, Catherine G, Mou, Stephanie, Metz, Cameron, Granger, Julie, Liu, Xiao-Ding, Bachmann, Niklas, Almagro-Pérez, Cristina, Jiang, Ann Chenyu, Yoo, Jeonghyun, Kim, Bridgette, Du, Scott, Foster, Eli, Hsu, Jocelyn Y, Rivera, Paula Andreu, Chu, Linda C, Liu, Fengze, Niknafs, Noushin, Fishman, Elliot K, Yuille, Alan, Roberts, Nicholas J, Thompson, Elizabeth D, Scharpf, Robert B, Cornish, Toby C, Jiao, Yuchen, Karchin, Rachel, Hruban, Ralph H, Wu, Pei-Hsun, Wirtz, Denis, Wood, Laura D
Published in bioRxiv (28.01.2023)
Published in bioRxiv (28.01.2023)
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Engineering self-propelled tumor-infiltrating CAR T cells using synthetic velocity receptors
Johnston, Adrian C, Alicea, Gretchen M, Lee, Cameron C, Patel, Payal V, Hanna, Eban A, Vaz, Eduarda, jaz, Andre, Wan, Zeqi, Nair, Praful R, Lim, Yeongseo, Chen, Tina, Du, Wenxuan, Kim, Dongjoo, Nichakawade, Tushar D, Rebecca, Vito W, Bonifant, Challice L, Fan, Rong, Kiemen, Ashley L, Wu, Pei-Hsun, Wirtz, Denis
Published in bioRxiv (26.03.2024)
Published in bioRxiv (26.03.2024)
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