Conformational transitions of a neurotensin receptor 1–Gi1 complex
Kato, Hideaki E., Zhang, Yan, Hu, Hongli, Suomivuori, Carl-Mikael, Kadji, Francois Marie Ngako, Aoki, Junken, Krishna Kumar, Kaavya, Fonseca, Rasmus, Hilger, Daniel, Huang, Weijiao, Latorraca, Naomi R., Inoue, Asuka, Dror, Ron O., Kobilka, Brian K., Skiniotis, Georgios
Published in Nature (London) (01.08.2019)
Published in Nature (London) (01.08.2019)
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Journal Article
Diverse GPCRs exhibit conserved water networks for stabilization and activation
Venkatakrishnan, A. J., Ma, Anthony K., Fonseca, Rasmus, Latorraca, Naomi R., Kelly, Brendan, Betz, Robin M., Asawa, Chaitanya, Kobilka, Brian K., Dror, Ron O.
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2019)
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Journal Article
Structural insights into the activation of metabotropic glutamate receptors
Koehl, Antoine, Hu, Hongli, Feng, Dan, Sun, Bingfa, Zhang, Yan, Robertson, Michael J., Chu, Matthew, Kobilka, Tong Sun, Laeremans, Toon, Steyaert, Jan, Tarrasch, Jeffrey, Dutta, Somnath, Fonseca, Rasmus, Weis, William I., Mathiesen, Jesper M., Skiniotis, Georgios, Kobilka, Brian K.
Published in Nature (London) (01.02.2019)
Published in Nature (London) (01.02.2019)
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Journal Article
Driving Structural Transitions in Molecular Simulations Using the Nonequilibrium Candidate Monte Carlo
Kurut, Anıl, Fonseca, Rasmus, Boomsma, Wouter
Published in The journal of physical chemistry. B (25.01.2018)
Published in The journal of physical chemistry. B (25.01.2018)
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Journal Article
Collision‐free poisson motion planning in ultra high‐dimensional molecular conformation spaces
Fonseca, Rasmus, Budday, Dominik, van den Bedem, Henry
Published in Journal of computational chemistry (05.05.2018)
Published in Journal of computational chemistry (05.05.2018)
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Journal Article
Fast, clash-free RNA conformational morphing using molecular junctions
Heliou, Amelie, Budday, Dominik, Fonseca, Rasmus, van den Bedem, Henry
Published in Bioinformatics (Oxford, England) (13.03.2017)
Published in Bioinformatics (Oxford, England) (13.03.2017)
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Journal Article
qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X‑Ray Electron Density Maps
van Zundert, Gydo C. P, Hudson, Brandi M, de Oliveira, Saulo H. P, Keedy, Daniel A, Fonseca, Rasmus, Heliou, Amelie, Suresh, Pooja, Borrelli, Kenneth, Day, Tyler, Fraser, James S, van den Bedem, Henry
Published in Journal of medicinal chemistry (27.12.2018)
Published in Journal of medicinal chemistry (27.12.2018)
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Journal Article
Uncovering patterns of atomic interactions in static and dynamic structures of proteins
Venkatakrishnan, A J, Fonseca, Rasmus, Ma, Anthony K, Hollingsworth, Scott A, Chemparathy, Augustine, Hilger, Daniel, Kooistra, Albert J, Ahmari, Ramin, M Madan Babu, Kobilka, Brian K, Dror, Ron
Published in bioRxiv (13.11.2019)
Published in bioRxiv (13.11.2019)
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Paper
Fast, clash-free RNA conformational morphing using molecular junctions
Héliou, Amélie, Budday, Dominik, Fonseca, Rasmus, van den Bedem, Henry
Published in Bioinformatics (Oxford, England) (15.07.2017)
Published in Bioinformatics (Oxford, England) (15.07.2017)
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Journal Article
Probing RNA Native Conformational Ensembles with Structural Constraints
Fonseca, Rasmus, van den Bedem, Henry, Bernauer, Julie
Published in Journal of computational biology (01.05.2016)
Published in Journal of computational biology (01.05.2016)
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Journal Article
Coupled Motions in β2AR:Gαs Conformational Ensembles
Pachov, Dimitar V, Fonseca, Rasmus, Arnol, Damien, Bernauer, Julie, van den Bedem, Henry
Published in Journal of chemical theory and computation (08.03.2016)
Published in Journal of chemical theory and computation (08.03.2016)
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Journal Article
Characterizing RNA ensembles from NMR data with kinematic models
Fonseca, Rasmus, Pachov, Dimitar V, Bernauer, Julie, van den Bedem, Henry
Published in Nucleic acids research (02.09.2014)
Published in Nucleic acids research (02.09.2014)
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Journal Article
Conformational transitions of a neurotensin receptor 1–Gi1 protein complex
Kato, Hideaki E., Zhang, Yan, Hu, Hongli, Suomivuori, Carl-Mikael, Kadji, Francois Marie Ngako, Aoki, Junken, Kumar, Kaavya Krishna, Fonseca, Rasmus, Hilger, Daniel, Huang, Weijiao, Latorraca, Naomi R., Inoue, Asuka, Dror, Ron O., Kobilka, Brian K., Skiniotis, Georgios
Published in Nature (London) (26.06.2019)
Published in Nature (London) (26.06.2019)
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Journal Article
Structural Insights into Metabotropic Glutamate Receptor Activation
Koehl, Antoine, Hu, Hongli, Feng, Dan, Sun, Bingfa, Zhang, Yan, Robertson, Michael J, Chu, Matthew, Kobilka, Tong Sun, Pardon, Els, Steyaert, Jan, Tarrasch, Jeffrey, Dutta, Somnath, Fonseca, Rasmus, Weis, William I, Mathiesen, Jesper M, Skiniotis, Georgios, Kobilka, Brian K
Published in Nature (London) (23.01.2019)
Published in Nature (London) (23.01.2019)
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Journal Article
Structural insights into the activation of metabotropic glutamate receptors
Koehl, Antoine, Hu, Hongli, Feng, Dan, Sun, Bingfa, Zhang, Yan, Robertson, Michael J., Chu, Matthew, Kobilka, Tong Sun, Laeremans, Toon, Steyaert, Jan, Tarrasch, Jeffrey, Dutta, Somnath, Fonseca, Rasmus, Weis, William I., Mathiesen, Jesper M., Skiniotis, Georgios, Kobilka, Brian K.
Published in Nature (London) (23.01.2019)
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Published in Nature (London) (23.01.2019)
Journal Article