A transcriptome-wide association study of high-grade serous epithelial ovarian cancer identifies new susceptibility genes and splice variants
Gusev, Alexander, Lawrenson, Kate, Lin, Xianzhi, Lyra, Paulo C., Kar, Siddhartha, Vavra, Kevin C., Segato, Felipe, Fonseca, Marcos A. S., Lee, Janet M., Pejovic, Tanya, Liu, Gang, Karlan, Beth Y., Freedman, Matthew L., Noushmehr, Houtan, Monteiro, Alvaro N., Pharoah, Paul D. P., Pasaniuc, Bogdan, Gayther, Simon A.
Published in Nature genetics (01.05.2019)
Published in Nature genetics (01.05.2019)
Get full text
Journal Article
Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer
Corona, Rosario I., Seo, Ji-Heui, Lin, Xianzhi, Hazelett, Dennis J., Reddy, Jessica, Fonseca, Marcos A. S., Abassi, Forough, Lin, Yvonne G., Mhawech-Fauceglia, Paulette Y., Shah, Sohrab P., Huntsman, David G., Gusev, Alexander, Karlan, Beth Y., Berman, Benjamin P., Freedman, Matthew L., Gayther, Simon A., Lawrenson, Kate
Published in Nature communications (24.04.2020)
Published in Nature communications (24.04.2020)
Get full text
Journal Article
Epigenomic charting and functional annotation of risk loci in renal cell carcinoma
Nassar, Amin H., Abou Alaiwi, Sarah, Baca, Sylvan C., Adib, Elio, Corona, Rosario I., Seo, Ji-Heui, Fonseca, Marcos A. S., Spisak, Sandor, El Zarif, Talal, Tisza, Viktoria, Braun, David A., Du, Heng, He, Monica, Flaifel, Abdallah, Alchoueiry, Michel, Denize, Thomas, Matar, Sayed G., Acosta, Andres, Shukla, Sachet, Hou, Yue, Steinharter, John, Bouchard, Gabrielle, Berchuck, Jacob E., O’Connor, Edward, Bell, Connor, Nuzzo, Pier Vitale, Mary Lee, Gwo-Shu, Signoretti, Sabina, Hirsch, Michelle S., Pomerantz, Mark, Henske, Elizabeth, Gusev, Alexander, Lawrenson, Kate, Choueiri, Toni K., Kwiatkowski, David J., Freedman, Matthew L.
Published in Nature communications (21.01.2023)
Published in Nature communications (21.01.2023)
Get full text
Journal Article
Prostate cancer reactivates developmental epigenomic programs during metastatic progression
Pomerantz, Mark M., Qiu, Xintao, Zhu, Yanyun, Takeda, David Y., Pan, Wenting, Baca, Sylvan C., Gusev, Alexander, Korthauer, Keegan D., Severson, Tesa M., Ha, Gavin, Viswanathan, Srinivas R., Seo, Ji-Heui, Nguyen, Holly M., Zhang, Baohui, Pasaniuc, Bogdan, Giambartolomei, Claudia, Alaiwi, Sarah A., Bell, Connor A., O’Connor, Edward P., Chabot, Matthew S., Stillman, David R., Lis, Rosina, Font-Tello, Alba, Li, Lewyn, Cejas, Paloma, Bergman, Andries M., Sanders, Joyce, van der Poel, Henk G., Gayther, Simon A., Lawrenson, Kate, Fonseca, Marcos A. S., Reddy, Jessica, Corona, Rosario I., Martovetsky, Gleb, Egan, Brian, Choueiri, Toni, Ellis, Leigh, Garraway, Isla P., Lee, Gwo-Shu Mary, Corey, Eva, Long, Henry W., Zwart, Wilbert, Freedman, Matthew L.
Published in Nature genetics (01.08.2020)
Published in Nature genetics (01.08.2020)
Get full text
Journal Article
Single-cell transcriptomic analysis of endometriosis
Fonseca, Marcos A. S., Haro, Marcela, Wright, Kelly N., Lin, Xianzhi, Abbasi, Forough, Sun, Jennifer, Hernandez, Lourdes, Orr, Natasha L., Hong, Jooyoon, Choi-Kuaea, Yunhee, Maluf, Horacio M., Balzer, Bonnie L., Fishburn, Aaron, Hickey, Ryan, Cass, Ilana, Goodridge, Helen S., Truong, Mireille, Wang, Yemin, Pisarska, Margareta D., Dinh, Huy Q., EL-Naggar, Amal, Huntsman, David G., Anglesio, Michael S., Goodman, Marc T., Medeiros, Fabiola, Siedhoff, Matthew, Lawrenson, Kate
Published in Nature genetics (01.02.2023)
Published in Nature genetics (01.02.2023)
Get full text
Journal Article
Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer
Baca, Sylvan C., Takeda, David Y., Seo, Ji-Heui, Hwang, Justin, Ku, Sheng Yu, Arafeh, Rand, Arnoff, Taylor, Agarwal, Supreet, Bell, Connor, O’Connor, Edward, Qiu, Xintao, Alaiwi, Sarah Abou, Corona, Rosario I., Fonseca, Marcos A. S., Giambartolomei, Claudia, Cejas, Paloma, Lim, Klothilda, He, Monica, Sheahan, Anjali, Nassar, Amin, Berchuck, Jacob E., Brown, Lisha, Nguyen, Holly M., Coleman, Ilsa M., Kaipainen, Arja, De Sarkar, Navonil, Nelson, Peter S., Morrissey, Colm, Korthauer, Keegan, Pomerantz, Mark M., Ellis, Leigh, Pasaniuc, Bogdan, Lawrenson, Kate, Kelly, Kathleen, Zoubeidi, Amina, Hahn, William C., Beltran, Himisha, Long, Henry W., Brown, Myles, Corey, Eva, Freedman, Matthew L.
Published in Nature communications (30.03.2021)
Published in Nature communications (30.03.2021)
Get full text
Journal Article
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation
Lin, Xianzhi, Fonseca, Marcos A S, Breunig, Joshua J, Corona, Rosario I, Lawrenson, Kate
Published in RNA biology (02.12.2021)
Published in RNA biology (02.12.2021)
Get full text
Journal Article
A Study of High-Grade Serous Ovarian Cancer Origins Implicates the SOX18 Transcription Factor in Tumor Development
Lawrenson, Kate, Fonseca, Marcos A.S., Liu, Annie Y., Segato Dezem, Felipe, Lee, Janet M., Lin, Xianzhi, Corona, Rosario I., Abbasi, Forough, Vavra, Kevin C., Dinh, Huy Q., Gill, Navjot Kaur, Seo, Ji-Heui, Coetzee, Simon, Lin, Yvonne G., Pejovic, Tanja, Mhawech-Fauceglia, Paulette, Rowat, Amy C., Drapkin, Ronny, Karlan, Beth Y., Hazelett, Dennis J., Freedman, Matthew L., Gayther, Simon A., Noushmehr, Houtan
Published in Cell reports (Cambridge) (10.12.2019)
Published in Cell reports (Cambridge) (10.12.2019)
Get full text
Journal Article
Predicting master transcription factors from pan-cancer expression data
Reddy, Jessica, Fonseca, Marcos A S, Corona, Rosario I, Nameki, Robbin, Segato Dezem, Felipe, Klein, Isaac A, Chang, Heidi, Chaves-Moreira, Daniele, Afeyan, Lena K, Malta, Tathiane M, Lin, Xianzhi, Abbasi, Forough, Font-Tello, Alba, Sabedot, Thais, Cejas, Paloma, Rodríguez-Malavé, Norma, Seo, Ji-Heui, Lin, De-Chen, Matulonis, Ursula, Karlan, Beth Y, Gayther, Simon A, Pasaniuc, Bogdan, Gusev, Alexander, Noushmehr, Houtan, Long, Henry, Freedman, Matthew L, Drapkin, Ronny, Young, Richard A, Abraham, Brian J, Lawrenson, Kate
Published in Science advances (26.11.2021)
Published in Science advances (26.11.2021)
Get full text
Journal Article
Growth, Yield and Grain Nutritional Quality in Three Brazilian Pearl Millets (Pennisetum americanum L.) with African or Indian origins
Medici, Leonardo O, Gonçalves, Fabíola V, Fonseca, Marcos Paulo S DA, Gaziola, Salete A, Schmidt, Daiana, Azevedo, Ricardo A, Pimentel, Carlos
Published in Anais da Academia Brasileira de Ciências (01.04.2018)
Published in Anais da Academia Brasileira de Ciências (01.04.2018)
Get full text
Journal Article
Abstract GMM-042: PAN-CANCER TRANSCRIPTION FACTOR ANALYSES IDENTIFY ZNF217 AS A NOVEL DRIVER IN HGSOC
Nameki, Robbin, Fonseca, Marcos A. S., Reddy, Jessica, Vavra, Kevin C., Segato, Felipe, Corona, Rosario I., Seo, Ji-Heui, Liu, Annie, Abbasi, Forough, Lin, Xianzhi, Karlan, Beth Y., Freedman, Matthew L., Gayther, Simon A., Noushmehr, Houtan, Lawrenson, Kate
Published in Clinical cancer research (15.11.2019)
Published in Clinical cancer research (15.11.2019)
Get full text
Journal Article
Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women
Lawrenson, Kate, Song, Fengju, Hazelett, Dennis J., Kar, Siddhartha P., Tyrer, Jonathan, Phelan, Catherine M., Corona, Rosario I., Rodríguez-Malavé, Norma I., Seo, Ji-Hei, Adler, Emily, Coetzee, Simon G., Segato, Felipe, Fonseca, Marcos A.S., Amos, Christopher I., Carney, Michael E., Chenevix-Trench, Georgia, Choi, Jiyeob, Doherty, Jennifer A., Jia, Weihua, Jin, Gang J., Kim, Byoung-Gie, Le, Nhu D., Lee, Juyeon, Li, Lian, Lim, Boon K., Adenan, Noor A., Mizuno, Mika, Park, Boyoung, Pearce, Celeste L., Shan, Kang, Shi, Yongyong, Shu, Xiao-Ou, Sieh, Weiva, Thompson, Pamela J., Wilkens, Lynne R., Wei, Qingyi, Woo, Yin L., Yan, Li, Karlan, Beth Y., Freedman, Matthew L., Noushmehr, Houtan, Goode, Ellen L., Berchuck, Andrew, Sellers, Thomas A., Teo, Soo-Hwang, Zheng, Wei, Matsuo, Keitaro, Park, Sue, Chen, Kexin, Pharoah, Paul D.P., Gayther, Simon A., Goodman, Marc T.
Published in Gynecologic oncology (01.05.2019)
Published in Gynecologic oncology (01.05.2019)
Get full text
Journal Article
A cellular and molecular portrait of endometriosis subtypes
Fonseca, Marcos A S, Wright, Kelly N, Lin, Xianzhi, Abbasi, ough, Haro, Marcela, Sun, Jennifer, Hernandez, Lourdes, Orr, Natasha L, Hong, Jooyoon, Choi-Kuaea, Yunhee, Maluf, Horacio M, Balzer, Bonnie L, Cass, Ilana, Truong, Mireille, Wang, Yemin, Pisarska, Margareta D, Dinh, Huy, El-Naggar, Amal, Huntsman, David, Anglesio, Michael S, Goodman, Marc T, Medeiros, Fabiola, Siedhoff, Matthew, Lawrenson, Kate
Published in bioRxiv (21.05.2021)
Published in bioRxiv (21.05.2021)
Get full text
Paper
Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer
Baca, Sylvan C, Takeda, David Y, Ji-Heui Seo, Hwang, Justin, Sheng Yu Ku, Arafeh, Rand, Taylor Arnoff, Agarwal, Supreet, Bell, Connor, Edward O’connor, Qiu, Xintao, Sarah Abou Alaiwi, Corona, Rosario I, Fonseca, Marcos A S, Giambartolomei, Claudia, Cejas, Paloma, Lim, Klothilda, He, Monica, Sheahan, Anjali, Nassar, Amin, Berchuck, Jacob E, Brown, Lisha, Nguyen, Holly M, Coleman, Ilsa M, Kaipainen, Arja, De Sarkar, Navonil, Nelson, Peter S, Morrissey, Colm, Keegan Korthauer, Pomerantz, Mark M, Ellis, Leigh, Pasaniuc, Bogdan, Lawrenson, Kate, Kelly, Kathleen, Zoubeidi, Amina, Hahn, William C, Beltran, Himisha, Long, Henry W, Brown, Myles, Corey, Eva, Freedman, Matthew L
Published in bioRxiv (24.10.2020)
Published in bioRxiv (24.10.2020)
Get full text
Paper
Predicting master transcription factors from pan-cancer expression data
Reddy, Jessica, Fonseca, Marcos A S, Corona, Rosario I, Nameki, Robbin, Felipe Segato Dezem, Klein, Isaac A, Chang, Heidi, Chaves-Moreira, Daniele, Afeyan, Lena, Malta, Tathiane M, Lin, Xianzhi, Abbasi, ough, Font-Tello, Alba, Sabedot, Thais, Cejas, Paloma, Rodríguez-Malavé, Norma, Ji-Heui Seo, De-Chen, Lin, Matulonis, Ursula, Karlan, Beth Y, Gayther, Simon A, Gusev, Alexander, Noushmehr, Houtan, Long, Henry, Freedman, Matthew L, Drapkin, Ronny, Abraham, Brian J, Young, Richard A, Lawrenson, Kate
Published in bioRxiv (12.11.2019)
Published in bioRxiv (12.11.2019)
Get full text
Paper