A general definition and nomenclature for alternative splicing events
Sammeth, Michael, Foissac, Sylvain, Guigó, Roderic
Published in PLoS computational biology (08.08.2008)
Published in PLoS computational biology (08.08.2008)
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An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
Jehl, Frédéric, Muret, Kévin, Bernard, Maria, Boutin, Morgane, Lagoutte, Laetitia, Désert, Colette, Dehais, Patrice, Esquerré, Diane, Acloque, Hervé, Giuffra, Elisabetta, Djebali, Sarah, Foissac, Sylvain, Derrien, Thomas, Pitel, Frédérique, Zerjal, Tatiana, Klopp, Christophe, Lagarrigue, Sandrine
Published in Scientific reports (24.11.2020)
Published in Scientific reports (24.11.2020)
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Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues
Degalez, Fabien, Charles, Mathieu, Foissac, Sylvain, Zhou, Haijuan, Guan, Dailu, Fang, Lingzhao, Klopp, Christophe, Allain, Coralie, Lagoutte, Laetitia, Lecerf, Frédéric, Acloque, Hervé, Giuffra, Elisabetta, Pitel, Frédérique, Lagarrigue, Sandrine
Published in Scientific reports (19.03.2024)
Published in Scientific reports (19.03.2024)
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A Combinatorial Code for CPE-Mediated Translational Control
Piqué, Maria, López, José Manuel, Foissac, Sylvain, Guigó, Roderic, Méndez, Raúl
Published in Cell (08.02.2008)
Published in Cell (08.02.2008)
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Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
Jehl, Frédéric, Muret, Kévin, Bernard, Maria, Boutin, Morgane, Lagoutte, Laetitia, Désert, Colette, Dehais, Patrice, Esquerré, Diane, Acloque, Hervé, Giuffra, Elisabetta, Djebali, Sarah, Foissac, Sylvain, Derrien, Thomas, Pitel, Frédérique, Zerjal, Tatiana, Klopp, Christophe, Lagarrigue, Sandrine
Published in Scientific reports (28.04.2021)
Published in Scientific reports (28.04.2021)
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species
Jehl, Frédéric, Degalez, Fabien, Bernard, Maria, Lecerf, Frédéric, Lagoutte, Laetitia, Désert, Colette, Coulée, Manon, Bouchez, Olivier, Leroux, Sophie, Abasht, Behnam, Tixier-Boichard, Michèle, Bed’hom, Bertrand, Burlot, Thierry, Gourichon, David, Bardou, Philippe, Acloque, Hervé, Foissac, Sylvain, Djebali, Sarah, Giuffra, Elisabetta, Zerjal, Tatiana, Pitel, Frédérique, Klopp, Christophe, Lagarrigue, Sandrine
Published in Frontiers in genetics (28.06.2021)
Published in Frontiers in genetics (28.06.2021)
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Major Reorganization of Chromosome Conformation During Muscle Development in Pig
Marti-Marimon, Maria, Vialaneix, Nathalie, Lahbib-Mansais, Yvette, Zytnicki, Matthias, Camut, Sylvie, Robelin, David, Yerle-Bouissou, Martine, Foissac, Sylvain
Published in Frontiers in genetics (05.10.2021)
Published in Frontiers in genetics (05.10.2021)
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Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing
Fève, Katia, Foissac, Sylvain, Pinton, Alain, Mompart, Florence, Esquerré, Diane, Faraut, Thomas, Yerle, Martine, Riquet, Juliette
Published in PloS one (09.11.2017)
Published in PloS one (09.11.2017)
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Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
Denoeud, France, Kapranov, Philipp, Ucla, Catherine, Frankish, Adam, Castelo, Robert, Drenkow, Jorg, Lagarde, Julien, Alioto, Tyler, Manzano, Caroline, Chrast, Jacqueline, Dike, Sujit, Wyss, Carine, Henrichsen, Charlotte N, Holroyd, Nancy, Dickson, Mark C, Taylor, Ruth, Hance, Zahra, Foissac, Sylvain, Myers, Richard M, Rogers, Jane, Hubbard, Tim, Harrow, Jennifer, Guigó, Roderic, Gingeras, Thomas R, Antonarakis, Stylianos E, Reymond, Alexandre
Published in Genome Research (01.06.2007)
Published in Genome Research (01.06.2007)
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Evidence for transcript networks composed of chimeric RNAs in human cells
Djebali, Sarah, Lagarde, Julien, Kapranov, Philipp, Lacroix, Vincent, Borel, Christelle, Mudge, Jonathan M, Howald, Cédric, Foissac, Sylvain, Ucla, Catherine, Chrast, Jacqueline, Ribeca, Paolo, Martin, David, Murray, Ryan R, Yang, Xinping, Ghamsari, Lila, Lin, Chenwei, Bell, Ian, Dumais, Erica, Drenkow, Jorg, Tress, Michael L, Gelpí, Josep Lluís, Orozco, Modesto, Valencia, Alfonso, van Berkum, Nynke L, Lajoie, Bryan R, Vidal, Marc, Stamatoyannopoulos, John, Batut, Philippe, Dobin, Alex, Harrow, Jennifer, Hubbard, Tim, Dekker, Job, Frankish, Adam, Salehi-Ashtiani, Kourosh, Reymond, Alexandre, Antonarakis, Stylianos E, Guigó, Roderic, Gingeras, Thomas R
Published in PloS one (04.01.2012)
Published in PloS one (04.01.2012)
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Modeling of autosomal-dominant retinitis pigmentosa in Caenorhabditis elegans uncovers a nexus between global impaired functioning of certain splicing factors and cell type-specific apoptosis
Rubio-Peña, Karinna, Fontrodona, Laura, Aristizábal-Corrales, David, Torres, Silvia, Cornes, Eric, García-Rodríguez, Francisco J, Serrat, Xènia, González-Knowles, David, Foissac, Sylvain, Porta-De-La-Riva, Montserrat, Cerón, Julián
Published in RNA (Cambridge) (01.12.2015)
Published in RNA (Cambridge) (01.12.2015)
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Genome-Wide Epigenetic Studies in Chicken: A Review
David, Sarah-Anne, Mersch, Marjorie, Foissac, Sylvain, Collin, Anne, Pitel, Frédérique, Coustham, Vincent
Published in Epigenomes (01.12.2017)
Published in Epigenomes (01.12.2017)
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Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation
Ozsolak, Fatih, Kapranov, Philipp, Foissac, Sylvain, Kim, Sang Woo, Fishilevich, Elane, Monaghan, A. Paula, John, Bino, Milos, Patrice M.
Published in Cell (10.12.2010)
Published in Cell (10.12.2010)
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Analysis of alternative splicing events in custom gene datasets by AStalavista
Foissac, Sylvain, Sammeth, Michael
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2015)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2015)
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An integrated encyclopedia of DNA elements in the human genome
Kundaje, Anshul, Collins, Patrick J, Davis, Carrie A, Khatun, Jainab, Lajoie, Bryan R, Landt, Stephen G, Safi, Alexias, Altshuler, Robert C, Cheng, Chao, Greven, Melissa, Hoffman, Michael M, Lassmann, Timo, Thurman, Robert E, Wu, Weisheng, Xi, Hualin S, Zhuang, Jiali, Gunter, Chris, Dekker, Job, Elnitski, Laura, Giddings, Morgan C, Margulies, Elliott H, Stamatoyannopoulos, John A, Wold, Barbara, Kuiper, Heather C, Dobin, Alex, Tanzer, Andrea, Xue, Chenghai, Zaleski, Chris, Roder, Maik, Baer, Michael T, Bell, Kimberly, Gordon, Assaf, Howald, Cedric, Johnson, Rory, Kingswood, Colin, Li, Guoliang, Luo, Oscar J, Robyr, Daniel, Ruan, Xiaoan, Skancke, Jorgen, Suzuki, Ana Maria, Takahashi, Hazuki, Tilgner, Hagen, Wang, Huaien, Hayashizaki, Yoshihide, Hannon, Gregory J, Malladi, Venkat S, Dreszer, Timothy R, Showers, Kimberly A, London, Darin, Zhang, Zhancheng, Keefe, Damian, Zheng, Meizhen, Vielmetter, Jost, Jain, Preti, Pusey, Barbara, Meadows, Sarah K, Absher, Devin M, Pennachio, Len A, Abyzov, Alexej, Barrell, Daniel, Bignell, Alexandra, Diekhans, Mark, Ezkurdia, Iakes, Frankish, Adam, Hunt, Toby, Jungreis, Irwin, Loveland, Jane, Manthravadi, Deepa, Pei, Baikang, Snow, Catherine, Zhang, Zhengdong, Alexander, Roger P, Balasubramanian, Suganthi, Bettinger, Keith, Cayting, Philip, Habegger, Lukas, Lamarre-Vincent, Nathan, Lindahl-Allen, Marianne, Monahan, Hannah, Patacsil, Dorrelyn, Struhl, Kevin, Ma, Lijia, Inoue, Daigo, Kellner, Tanja, Kirchmaier, Stephan, Bates, Daniel L, Canfield, Theresa K, Boatman, Lisa, Neph, Shane J, Roach, Vaughn, Sanchez, Minerva E, Shafer, Anthony O, Vernot, Benjamin, Weaver, Molly A, Akey, Joshua M, Bender, Michael, Navas, Patrick, Hussami, Nadine, Schaub, Marc A
Published in Nature (London) (06.09.2012)
Published in Nature (London) (06.09.2012)
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