Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
Sinha, Rashmi, Abu-Ali, Galeb, Vogtmann, Emily, Fodor, Anthony A, Ren, Boyu, Amir, Amnon, Schwager, Emma, Crabtree, Jonathan, Ma, Siyuan, Abnet, Christian C, Knight, Rob, White, Owen, Huttenhower, Curtis
Published in Nature biotechnology (01.11.2017)
Published in Nature biotechnology (01.11.2017)
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Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer
Arthur, Janelle C., Gharaibeh, Raad Z., Mühlbauer, Marcus, Perez-Chanona, Ernesto, Uronis, Joshua M., McCafferty, Jonathan, Fodor, Anthony A., Jobin, Christian
Published in Nature communications (03.09.2014)
Published in Nature communications (03.09.2014)
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Locoregional Effects of Microbiota in a Preclinical Model of Colon Carcinogenesis
Tomkovich, Sarah, Yang, Ye, Winglee, Kathryn, Gauthier, Josee, Mühlbauer, Marcus, Sun, Xiaolun, Mohamadzadeh, Mansour, Liu, Xiuli, Martin, Patricia, Wang, Gary P, Oswald, Eric, Fodor, Anthony A, Jobin, Christian
Published in Cancer research (Chicago, Ill.) (15.05.2017)
Published in Cancer research (Chicago, Ill.) (15.05.2017)
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Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota
Arthur, Janelle C., Perez-Chanona, Ernesto, Mühlbauer, Marcus, Tomkovich, Sarah, Uronis, Joshua M., Fan, Ting-Jia, Campbell, Barry J., Abujamel, Turki, Dogan, Belgin, Rogers, Arlin B., Rhodes, Jonathan M., Stintzi, Alain, Simpson, Kenneth W., Hansen, Jonathan J., Keku, Temitope O., Fodor, Anthony A., Jobin, Christian
Published in Science (American Association for the Advancement of Science) (05.10.2012)
Published in Science (American Association for the Advancement of Science) (05.10.2012)
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Human colon mucosal biofilms from healthy or colon cancer hosts are carcinogenic
Tomkovich, Sarah, Dejea, Christine M, Winglee, Kathryn, Drewes, Julia L, Chung, Liam, Housseau, Franck, Pope, Jillian L, Gauthier, Josee, Sun, Xiaolun, Mühlbauer, Marcus, Liu, Xiuli, Fathi, Payam, Anders, Robert A, Besharati, Sepideh, Perez-Chanona, Ernesto, Yang, Ye, Ding, Hua, Wu, Xinqun, Wu, Shaoguang, White, James R, Gharaibeh, Raad Z, Fodor, Anthony A, Wang, Hao, Pardoll, Drew M, Jobin, Christian, Sears, Cynthia L
Published in The Journal of clinical investigation (01.04.2019)
Published in The Journal of clinical investigation (01.04.2019)
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Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing
Fouladi, Farnaz, Bailey, Maximilian J., Patterson, William B., Sioda, Michael, Blakley, Ivory C., Fodor, Anthony A., Jones, Roshonda B., Chen, Zhanghua, Kim, Jeniffer S., Lurmann, Frederick, Martino, Cameron, Knight, Rob, Gilliland, Frank D., Alderete, Tanya L.
Published in Environment international (01.05.2020)
Published in Environment international (01.05.2020)
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The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations
Fodor, Anthony A, Klem, Erich R, Gilpin, Deirdre F, Elborn, J Stuart, Boucher, Richard C, Tunney, Michael M, Wolfgang, Matthew C
Published in PloS one (26.09.2012)
Published in PloS one (26.09.2012)
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Batch effects removal for microbiome data via conditional quantile regression
Ling, Wodan, Lu, Jiuyao, Zhao, Ni, Lulla, Anju, Plantinga, Anna M., Fu, Weijia, Zhang, Angela, Liu, Hongjiao, Song, Hoseung, Li, Zhigang, Chen, Jun, Randolph, Timothy W., Koay, Wei Li A., White, James R., Launer, Lenore J., Fodor, Anthony A., Meyer, Katie A., Wu, Michael C.
Published in Nature communications (15.09.2022)
Published in Nature communications (15.09.2022)
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Mouse Paneth cell antimicrobial function is independent of Nod2
Shanahan, Michael T, Carroll, Ian M, Grossniklaus, Emily, White, Andrew, von Furstenberg, Richard J, Barner, Roshonda, Fodor, Anthony A, Henning, Susan J, Sartor, R Balfour, Gulati, Ajay S
Published in Gut (01.06.2014)
Published in Gut (01.06.2014)
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On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples
Sun, Shan, Zhu, Xiangzhu, Huang, Xiang, Murff, Harvey J., Ness, Reid M., Seidner, Douglas L., Sorgen, Alicia A., Blakley, Ivory C., Yu, Chang, Dai, Qi, Azcarate-Peril, M. Andrea, Shrubsole, Martha J., Fodor, Anthony A.
Published in Scientific reports (21.07.2021)
Published in Scientific reports (21.07.2021)
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Giardia hinders growth by disrupting nutrient metabolism independent of inflammatory enteropathy
Giallourou, Natasa, Arnold, Jason, McQuade, Elizabeth T. Rogawski, Awoniyi, Muyiwa, Becket, Rose Viguna Thomas, Walsh, Kenneth, Herzog, Jeremy, Gulati, Ajay S., Carroll, Ian M., Montgomery, Stephanie, Quintela, Pedro Henrique, Faust, Angela M., Singer, Steven M., Fodor, Anthony A., Ahmad, Tahmeed, Mahfuz, Mustafa, Mduma, Esto, Walongo, Thomas, Guerrant, Richard L., Balfour Sartor, R., Swann, Jonathan R., Kosek, Margaret N., Bartelt, Luther A.
Published in Nature communications (18.05.2023)
Published in Nature communications (18.05.2023)
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Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes
Winglee, Kathryn, Howard, Annie Green, Sha, Wei, Gharaibeh, Raad Z, Liu, Jiawu, Jin, Donghui, Fodor, Anthony A, Gordon-Larsen, Penny
Published in Microbiome (15.09.2017)
Published in Microbiome (15.09.2017)
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Gut microbial communities from patients with anorexia nervosa do not influence body weight in recipient germ-free mice
Glenny, Elaine M., Fouladi, Farnaz, Thomas, Stephanie A., Bulik-Sullivan, Emily C., Tang, Quyen, Djukic, Zorka, Trillo-Ordonez, Yesel S., Fodor, Anthony A., Tarantino, Lisa M., M. Bulik, Cynthia, Carroll, Ian M.
Published in Gut microbes (01.01.2021)
Published in Gut microbes (01.01.2021)
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The "most wanted" taxa from the human microbiome for whole genome sequencing
Fodor, Anthony A, DeSantis, Todd Z, Wylie, Kristine M, Badger, Jonathan H, Ye, Yuzhen, Hepburn, Theresa, Hu, Ping, Sodergren, Erica, Liolios, Konstantinos, Huot-Creasy, Heather, Birren, Bruce W, Earl, Ashlee M
Published in PloS one (26.07.2012)
Published in PloS one (26.07.2012)
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Longer-Term Weight Loss Outcomes Are Not Primarily Driven by Diet Following Roux-en-Y Gastric Bypass and Sleeve Gastrectomy
Sorgen, Alicia A, Fodor, Anthony A, Steffen, Kristine J, Carroll, Ian M, Bond, Dale S, Crosby, Ross, Heinberg, Leslie J
Published in Nutrients (26.07.2023)
Published in Nutrients (26.07.2023)
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