Workflow Optimization for Identification of Female Germline or Oogonial Stem Cells in Human Ovarian Cortex Using Single-Cell RNA Sequence Analysis
Alberico, Hannah, Fleischmann, Zoë, Bobbitt, Tyler, Takai, Yasushi, Ishihara, Osamu, Seki, Hiroyuki, Anderson, Richard A, Telfer, Evelyn E, Woods, Dori C, Tilly, Jonathan L
Published in Stem cells (Dayton, Ohio) (27.05.2022)
Published in Stem cells (Dayton, Ohio) (27.05.2022)
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Journal Article
Reanalysis of mtDNA mutations of human primordial germ cells (PGCs) reveals NUMT contamination and suggests that selection in PGCs may be positive
Fleischmann, Zoë, Cote-L'Heureux, Auden, Franco, Melissa, Oreshkov, Sergey, Annis, Sofia, Khrapko, Mark, Aidlen, Dylan, Popadin, Konstantin, Woods, Dori C, Tilly, Jonathan L, Khrapko, Konstantin
Published in Mitochondrion (01.01.2024)
Published in Mitochondrion (01.01.2024)
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Journal Article
A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand
Mikhailova, Alina G, Mikhailova, Alina A, Ushakova, Kristina, Tretiakov, Evgeny O, Iliushchenko, Dmitrii, Shamansky, Victor, Lobanova, Valeria, Kozenkov, Ivan, Efimenko, Bogdan, Yurchenko, Andrey A, Kozenkova, Elena, Zdobnov, Evgeny M, Makeev, Vsevolod, Yurov, Valerian, Tanaka, Masashi, Gostimskaya, Irina, Fleischmann, Zoe, Annis, Sofia, Franco, Melissa, Wasko, Kevin, Denisov, Stepan, Kunz, Wolfram S, Knorre, Dmitry, Mazunin, Ilya, Nikolaev, Sergey, Fellay, Jacques, Reymond, Alexandre, Khrapko, Konstantin, Gunbin, Konstantin, Popadin, Konstantin
Published in Nucleic acids research (14.10.2022)
Published in Nucleic acids research (14.10.2022)
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Journal Article
Mitochondrial Pseudogenes Suggest Repeated Inter-Species Hybridization among Direct Human Ancestors
Popadin, Konstantin, Gunbin, Konstantin, Peshkin, Leonid, Annis, Sofia, Fleischmann, Zoe, Franco, Melissa, Kraytsberg, Yevgenya, Markuzon, Natalya, Ackermann, Rebecca R, Khrapko, Konstantin
Published in Genes (01.05.2022)
Published in Genes (01.05.2022)
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Journal Article
Prevalence of UV Mutational Signatures Among Cutaneous Primary Tumors
Mata, Douglas A, Williams, Erik A, Sokol, Ethan, Oxnard, Geoffrey R, Fleischmann, Zoe, Tse, Julie Y, Decker, Brennan
Published in JAMA network open (23.03.2022)
Published in JAMA network open (23.03.2022)
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Journal Article
LUCS: a high-resolution nucleic acid sequencing tool for accurate long-read analysis of individual DNA molecules
Annis, Sofia, Fleischmann, Zoë, Logan, Robert, Mullin-Bernstein, Zachary, Franco, Melissa, Saürich, Josefin, Tilly, Jonathan L, Woods, Dori C, Khrapko, Konstantin
Published in Aging (Albany, NY.) (28.04.2020)
Published in Aging (Albany, NY.) (28.04.2020)
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Increased KRAS G12C Prevalence, High Tumor Mutational Burden, and Specific Mutational Signatures Are Associated With MUTYH Mutations: A Pan-Cancer Analysis
Disel, Umut, Sivakumar, Smruthy, Pham, Tim, Fleischmann, Zoe, Anu, R I, Sokol, Ethan S, Kurzrock, Razelle
Published in The oncologist (Dayton, Ohio) (02.02.2024)
Published in The oncologist (Dayton, Ohio) (02.02.2024)
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Journal Article
Quasi-Mendelian paternal inheritance of mitochondrial DNA: A notorious artifact, or anticipated behavior?
Annis, Sofia, Fleischmann, Zoe, Khrapko, Mark, Franco, Melissa, Wasko, Kevin, Woods, Dori, Kunz, Wolfram S., Ellis, Peter, Khrapko, Konstantin
Published in Proceedings of the National Academy of Sciences - PNAS (23.07.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (23.07.2019)
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Journal Article
POLE variant phenotypic classification to enable identification of patients with colorectal cancer (CRC) who may benefit from immune checkpoint inhibition (ICI)
Keller, Rachel Beth, Fleischmann, Zoe, Sivakumar, Smruthy, Sharaf, Radwa, Janovitz, Tyler, Schrock, Alexa B., Tukachinsky, Hanna, Zhong, Lei, Mata, Douglas A., Lopez, Lyle, Sokol, Ethan, Frampton, Garrett M., Lin, Douglas I., Oxnard, Geoffrey R., Williams, Erik A., Elvin, Julia A., Decker, Brennan J.
Published in Journal of clinical oncology (20.01.2024)
Published in Journal of clinical oncology (20.01.2024)
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Journal Article
Dynamics of the most common pathogenic mtDNA variant m.3243A > G demonstrate frequency-dependency in blood and positive selection in the germline
Franco, Melissa, Pickett, Sarah J, Fleischmann, Zoe, Khrapko, Mark, Cote-L'Heureux, Auden, Aidlen, Dylan, Stein, David, Markuzon, Natasha, Popadin, Konstantin, Braverman, Maxim, Woods, Dori C, Tilly, Jonathan L, Turnbull, Doug M, Khrapko, Konstantin
Published in Human molecular genetics (28.11.2022)
Published in Human molecular genetics (28.11.2022)
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Journal Article
A Novel HRD Signature Is Predictive of FOLFIRINOX Benefit in Metastatic Pancreatic Cancer
Chen, Kuei-Ting, Madison, Russell, Moore, Jay, Jin, Dexter, Fleischmann, Zoe, Newberg, Justin, Schrock, Alexa, Bhardwaj, Neeru, Lofgren, Katherine T, He, Jie, Frampton, Garrett, Hegde, Priti, Fabrizio, David, Pishvaian, Michael J, Ebot, Ericka, Singhi, Aatur, Sokol, Ethan
Published in The oncologist (Dayton, Ohio) (03.08.2023)
Published in The oncologist (Dayton, Ohio) (03.08.2023)
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Journal Article
Abstract 228: Recurrent mitochondrial mutations in thyroid cancer
Hopkins, Julia F., Fleischmann, Zoe, Jin, Dexter X., Killian, Jonathan Keith, Montesion, Meagan
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract P3-08-02: The frequency and somatic mutation landscape of Fibroblast growth factor receptor ( FGFR ) alterations in breast cancer
Giridhar, Karthik V, Sokol, Ethan S, Vedell, Peter T, Sinnwell, Jason P, Desai, Aakash, Haddad, Tufia C, O’Sullivan, Ciara C, Leon-Ferre, Roberto A, Yadav, Siddhartha, Sideras, Kostandinos, Ernst, Brenda, Liu, Minetta C, Casey, Abe Eyman, Tang, Xiaojia, Fleischmann, Zoe, Murugesan, Karthikeyan, Kalari, Krishna R, Goetz, Matthew P
Published in Cancer research (Chicago, Ill.) (15.02.2022)
Published in Cancer research (Chicago, Ill.) (15.02.2022)
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Abstract 1249: Development of a pan-cancer algorithm to predict homologous recombination deficiency and sensitivity to PARPi therapy
Antonarakis, Emmanuel, Moore, Jay, Jin, Dexter, Chen, Tim, Newberg, Justin, Fleischmann, Zoe, Murugesan, Karthikeyan, Frampton, Garrett, Fabrizio, David, Madison, Russell, Sokol, Ethan
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Abstract 966: Exploration of a novel HRD signature (HRDsig) as a biomarker for rucaparib benefit in ARIEL2
Sokol, Ethan S., Madison, Russell W., Jin, Dexter X., Chen, Kuei Ting, Fleischmann, Zoe, Newberg, Justin, Shrock, Alexa, Fabrizio, David, He, Jie, Bhardwaj, Neeru, Lin, Kevin K., McNeish, Iain A., Swisher, Elizabeth M.
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract 931: Comprehensive analysis of 3,600 small cell lung cancer cases reveals rare genetic subtypes and multiple mechanisms of histological transformation
Sivakumar, Smruthy, Moore, Jay A., Montesion, Meagan, Lin, Douglas I., Fleischmann, Zoe, Ebot, Ericka M., Newberg, Justin, Mills, Jennifer M., Hegde, Priti S., Frampton, Garrett M., Sage, Julien, Lovly, Christine M.
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Poor Prognosis among Radiation-Associated Bladder Cancer Is Defined by Clinicogenomic Features
Wijetunga, N. Ari, Gessner, Kathryn H., Kanchi, Krishna, Moore, Jay A., Fleischmann, Zoe, Jin, Dexter X., Frampton, Garrett M., Sturdivant, Michael, Repka, Michael, Sud, Shivani, Corcoran, David L., Galsky, Matthew D., Milowsky, Matthew I., Wobker, Sara E., Kim, William Y., Rose, Tracy L., Damrauer, Jeffrey S.
Published in Cancer research communications (01.09.2024)
Published in Cancer research communications (01.09.2024)
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Journal Article
Abstract 305: POLE- specific variant classification strategy is critical for identifying patients who may benefit from immunotherapy
Keller, Rachel B., Haberberger, James, Janovitz, Tyler, Schrock, Alexa B., Tukachinsky, Hanna, Zhong, Lei, Mata, Douglas A., Lopez, Lyle V., Fleischmann, Zoe, Sharaf, Radwa, Sokol, Ethan S., Frampton, Garrett M., Patel, Nimesh R., Lin, Douglas I., Oxnard, Geoff R., Williams, Erik A., Elvin, Julia A., Decker, Brennan
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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