eQuilibrator 3.0: a database solution for thermodynamic constant estimation
Beber, Moritz E, Gollub, Mattia G, Mozaffari, Dana, Shebek, Kevin M, Flamholz, Avi I, Milo, Ron, Noor, Elad
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Revisiting Trade-offs between Rubisco Kinetic Parameters
Flamholz, Avi I, Prywes, Noam, Moran, Uri, Davidi, Dan, Bar-On, Yinon M, Oltrogge, Luke M, Alves, Rui, Savage, David, Milo, Ron
Published in Biochemistry (Easton) (06.08.2019)
Published in Biochemistry (Easton) (06.08.2019)
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Journal Article
Functional reconstitution of a bacterial CO2 concentrating mechanism in Escherichia coli
Flamholz, Avi I, Dugan, Eli, Blikstad, Cecilia, Gleizer, Shmuel, Ben-Nissan, Roee, Amram, Shira, Antonovsky, Niv, Ravishankar, Sumedha, Noor, Elad, Bar-Even, Arren, Milo, Ron, Savage, David F
Published in eLife (21.10.2020)
Published in eLife (21.10.2020)
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Journal Article
Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area
Greenwald, Hannah D., Kennedy, Lauren C., Hinkle, Adrian, Whitney, Oscar N., Fan, Vinson B., Crits-Christoph, Alexander, Harris-Lovett, Sasha, Flamholz, Avi I., Al-Shayeb, Basem, Liao, Lauren D., Beyers, Matt, Brown, Daniel, Chakrabarti, Alicia R., Dow, Jason, Frost, Dan, Koekemoer, Mark, Lynch, Chris, Sarkar, Payal, White, Eileen, Kantor, Rose, Nelson, Kara L.
Published in Water research X (01.08.2021)
Published in Water research X (01.08.2021)
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Journal Article
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
Huttenhower, Curtis, Flamholz, Avi I, Landis, Jessica N, Sahi, Sauhard, Myers, Chad L, Olszewski, Kellen L, Hibbs, Matthew A, Siemers, Nathan O, Troyanskaya, Olga G, Coller, Hilary A
Published in BMC bioinformatics (12.07.2007)
Published in BMC bioinformatics (12.07.2007)
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Journal Article
Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle
Claassens, Nico J., Scarinci, Giovanni, Fischer, Axel, Flamholz, Avi I., Newell, William, Frielingsdorf, Stefan, Lenz, Oliver, Bar-Even, Arren
Published in Proceedings of the National Academy of Sciences - PNAS (08.09.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (08.09.2020)
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Journal Article
Protein cost minimization promotes the emergence of coenzyme redundancy
Goldford, Joshua E, George, Ashish B, Flamholz, Avi I, Segrè, Daniel
Published in Proceedings of the National Academy of Sciences - PNAS (05.04.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (05.04.2022)
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Journal Article
Trajectories for the evolution of bacterial CO2-concentrating mechanisms
Flamholz, Avi I, Dugan, Eli, Panich, Justin, Desmarais, John J, Oltrogge, Luke M, Fischer, Woodward W, Singer, Steven W, Savage, David F
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2022)
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Journal Article
Uniform binding and negative catalysis at the origin of enzymes
Noor, Elad, Flamholz, Avi I., Jayaraman, Vijay, Ross, Brian L., Cohen, Yair, Patrick, Wayne M., Gruic‐Sovulj, Ita, Tawfik, Dan S.
Published in Protein science (01.08.2022)
Published in Protein science (01.08.2022)
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Journal Article
Trajectories for the evolution of bacterial CO 2 -concentrating mechanisms
Flamholz, Avi I, Dugan, Eli, Panich, Justin, Desmarais, John J, Oltrogge, Luke M, Fischer, Woodward W, Singer, Steven W, Savage, David F
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2022)
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Journal Article
Learning to Build a β‑Carboxysome
Blikstad, Cecilia, Flamholz, Avi I, Oltrogge, Luke M, Savage, David F
Published in Biochemistry (Easton) (23.04.2019)
Published in Biochemistry (Easton) (23.04.2019)
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Journal Article
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO2 through geologic time should be reevaluated
Wang, Renée Z, Nichols, Robert J, Liu, Albert K, Flamholz, Avi I, Artier, Juliana, Banda, Doug M, Savage, David F, Eiler, John M, Shih, Patrick M, Fischer, Woodward W
Published in Proceedings of the National Academy of Sciences - PNAS (16.05.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (16.05.2023)
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Journal Article
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO 2 through geologic time should be reevaluated
Wang, Renée Z, Nichols, Robert J, Liu, Albert K, Flamholz, Avi I, Artier, Juliana, Banda, Doug M, Savage, David F, Eiler, John M, Shih, Patrick M, Fischer, Woodward W
Published in Proceedings of the National Academy of Sciences - PNAS (16.05.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (16.05.2023)
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Journal Article
DABs are inorganic carbon pumps found throughout prokaryotic phyla
Desmarais, John J., Flamholz, Avi I., Blikstad, Cecilia, Dugan, Eli J., Laughlin, Thomas G., Oltrogge, Luke M., Chen, Allen W., Wetmore, Kelly, Diamond, Spencer, Wang, Joy Y., Savage, David F.
Published in Nature microbiology (01.12.2019)
Published in Nature microbiology (01.12.2019)
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Journal Article