Chromatin states in pluripotent, differentiated, and reprogrammed cells
Fisher, Cynthia L, Fisher, Amanda G
Published in Current opinion in genetics & development (01.04.2011)
Published in Current opinion in genetics & development (01.04.2011)
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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Seitan, Vlad C, Faure, Andre J, Zhan, Ye, McCord, Rachel Patton, Lajoie, Bryan R, Ing-Simmons, Elizabeth, Lenhard, Boris, Giorgetti, Luca, Heard, Edith, Fisher, Amanda G, Flicek, Paul, Dekker, Job, Merkenschlager, Matthias
Published in Genome research (01.12.2013)
Published in Genome research (01.12.2013)
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Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
Cuartero, Sergi, Weiss, Felix D, Dharmalingam, Gopuraja, Guo, Ya, Ing-Simmons, Elizabeth, Masella, Silvia, Robles-Rebollo, Irene, Xiao, Xiaolin, Wang, Yi-Fang, Barozzi, Iros, Djeghloul, Dounia, Amano, Mariane T, Niskanen, Henri, Petretto, Enrico, Dowell, Robin D, Tachibana, Kikuë, Kaikkonen, Minna U, Nasmyth, Kim A, Lenhard, Boris, Natoli, Gioacchino, Fisher, Amanda G, Merkenschlager, Matthias
Published in Nature immunology (01.09.2018)
Published in Nature immunology (01.09.2018)
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Journal Article
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
Ing-Simmons, Elizabeth, Seitan, Vlad C, Faure, Andre J, Flicek, Paul, Carroll, Thomas, Dekker, Job, Fisher, Amanda G, Lenhard, Boris, Merkenschlager, Matthias
Published in Genome research (01.04.2015)
Published in Genome research (01.04.2015)
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Journal Article
DNA Synthesis Is Required for Reprogramming Mediated by Stem Cell Fusion
Tsubouchi, Tomomi, Soza-Ried, Jorge, Brown, Karen, Piccolo, Francesco M., Cantone, Irene, Landeira, David, Bagci, Hakan, Hochegger, Helfrid, Merkenschlager, Matthias, Fisher, Amanda G.
Published in Cell (14.02.2013)
Published in Cell (14.02.2013)
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T cell receptor signaling controls Foxp3 expression via PI3K, Akt, and mTOR
Sauer, Stephan, Bruno, Ludovica, Hertweck, Arnulf, Finlay, David, Leleu, Marion, Spivakov, Mikhail, Knight, Zachary A, Cobb, Bradley S, Cantrell, Doreen, O'Connor, Eric, Shokat, Kevan M, Fisher, Amanda G, Merkenschlager, Matthias
Published in Proceedings of the National Academy of Sciences - PNAS (03.06.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (03.06.2008)
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A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks
Al-Jibury, Ediem, King, James W D, Guo, Ya, Lenhard, Boris, Fisher, Amanda G, Merkenschlager, Matthias, Rueckert, Daniel
Published in Nature communications (17.08.2023)
Published in Nature communications (17.08.2023)
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CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression
Schnetz, Michael P, Handoko, Lusy, Akhtar-Zaidi, Batool, Bartels, Cynthia F, Pereira, C Filipe, Fisher, Amanda G, Adams, David J, Flicek, Paul, Crawford, Gregory E, Laframboise, Thomas, Tesar, Paul, Wei, Chia-Lin, Scacheri, Peter C
Published in PLoS genetics (01.07.2010)
Published in PLoS genetics (01.07.2010)
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A role for Dicer in immune regulation
Cobb, Bradley S, Hertweck, Arnulf, Smith, James, O'Connor, Eric, Graf, Daniel, Cook, Terence, Smale, Stephen T, Sakaguchi, Shimon, Livesey, Frederick J, Fisher, Amanda G, Merkenschlager, Matthias
Published in The Journal of experimental medicine (30.10.2006)
Published in The Journal of experimental medicine (30.10.2006)
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Journal Article
Cohesin-dependence of neuronal gene expression relates to chromatin loop length
Calderon, Lesly, Weiss, Felix D, Beagan, Jonathan A, Oliveira, Marta S, Georgieva, Radina, Wang, Yi-Fang, Carroll, Thomas S, Dharmalingam, Gopuraja, Gong, Wanfeng, Tossell, Kyoko, de Paola, Vincenzo, Whilding, Chad, Ungless, Mark A, Fisher, Amanda G, Phillips-Cremins, Jennifer E, Merkenschlager, Matthias
Published in eLife (26.04.2022)
Published in eLife (26.04.2022)
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Journal Article
Chromatin signatures of pluripotent cell lines
Azuara, Véronique, Fisher, Amanda G, Perry, Pascale, Sauer, Stephan, Spivakov, Mikhail, Jørgensen, Helle F, John, Rosalind M, Gouti, Mina, Casanova, Miguel, Warnes, Gary, Merkenschlager, Matthias
Published in Nature cell biology (01.05.2006)
Published in Nature cell biology (01.05.2006)
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Journal Article
Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters
Robles-Rebollo, Irene, Cuartero, Sergi, Canellas-Socias, Adria, Wells, Sarah, Karimi, Mohammad M, Mereu, Elisabetta, Chivu, Alexandra G, Heyn, Holger, Whilding, Chad, Dormann, Dirk, Marguerat, Samuel, Rioja, Inmaculada, Prinjha, Rab K, Stumpf, Michael P H, Fisher, Amanda G, Merkenschlager, Matthias
Published in Nature communications (27.07.2022)
Published in Nature communications (27.07.2022)
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Epigenetic changes induced by in utero dietary challenge result in phenotypic variability in successive generations of mice
Van de Pette, Mathew, Dimond, Andrew, Galvão, António M, Millership, Steven J, To, Wilson, Prodani, Chiara, McNamara, Gráinne, Bruno, Ludovica, Sardini, Alessandro, Webster, Zoe, McGinty, James, French, Paul M W, Uren, Anthony G, Castillo-Fernandez, Juan, Watkinson, William, Ferguson-Smith, Anne C, Merkenschlager, Matthias, John, Rosalind M, Kelsey, Gavin, Fisher, Amanda G
Published in Nature communications (05.05.2022)
Published in Nature communications (05.05.2022)
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Protein restriction during pregnancy alters Cdkn1c silencing, dopamine circuitry and offspring behaviour without changing expression of key neuronal marker genes
Prodani, Chiara, Irvine, Elaine E, Sardini, Alessandro, Gleneadie, Hannah J, Dimond, Andrew, Van de Pette, Mathew, John, Rosalind, Kokkinou, Michelle, Howes, Oliver, Withers, Dominic J, Ungless, Mark A, Merkenschlager, Matthias, Fisher, Amanda G
Published in Scientific reports (12.04.2024)
Published in Scientific reports (12.04.2024)
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