Ribosomal Database Project: data and tools for high throughput rRNA analysis
Cole, James R, Wang, Qiong, Fish, Jordan A, Chai, Benli, McGarrell, Donna M, Sun, Yanni, Brown, C Titus, Porras-Alfaro, Andrea, Kuske, Cheryl R, Tiedje, James M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
FunGene: the functional gene pipeline and repository
Fish, Jordan A, Chai, Benli, Wang, Qiong, Sun, Yanni, Brown, C Titus, Tiedje, James M, Cole, James R
Published in Frontiers in microbiology (2013)
Published in Frontiers in microbiology (2013)
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Journal Article
Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool
Wang, Qiong, Quensen, 3rd, John F, Fish, Jordan A, Lee, Tae Kwon, Sun, Yanni, Tiedje, James M, Cole, James R
Published in mBio (17.09.2013)
Published in mBio (17.09.2013)
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Journal Article
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay
Chai, Benli, Tsoi, Tamara V, Iwai, Shoko, Liu, Cun, Fish, Jordan A, Gu, Cheng, Johnson, Timothy A, Zylstra, Gerben, Teppen, Brian J, Li, Hui, Hashsham, Syed A, Boyd, Stephen A, Cole, James R, Tiedje, James M
Published in PloS one (16.06.2016)
Published in PloS one (16.06.2016)
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Journal Article
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
Sul, Woo Jun, Cole, James R, Jesus, Ederson da C, Wang, Qiong, Farris, Ryan J, Fish, Jordan A, Tiedje, James M
Published in Proceedings of the National Academy of Sciences - PNAS (30.08.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (30.08.2011)
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Journal Article
Xander: employing a novel method for efficient gene-targeted metagenomic assembly
Wang, Qiong, Fish, Jordan A, Gilman, Mariah, Sun, Yanni, Brown, C Titus, Tiedje, James M, Cole, James R
Published in Microbiome (05.08.2015)
Published in Microbiome (05.08.2015)
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Journal Article
The khmer software package: enabling efficient nucleotide sequence analysis [version 1; peer review: 2 approved, 1 approved with reservations]
Crusoe, Michael R, Alameldin, Hussien F, Awad, Sherine, Boucher, Elmar, Caldwell, Adam, Cartwright, Reed, Charbonneau, Amanda, Constantinides, Bede, Edvenson, Greg, Fay, Scott, Fenton, Jacob, Fenzl, Thomas, Fish, Jordan, Garcia-Gutierrez, Leonor, Garland, Phillip, Gluck, Jonathan, González, Iván, Guermond, Sarah, Guo, Jiarong, Gupta, Aditi, Herr, Joshua R, Howe, Adina, Hyer, Alex, Härpfer, Andreas, Irber, Luiz, Kidd, Rhys, Lin, David, Lippi, Justin, Mansour, Tamer, McA'Nulty, Pamela, McDonald, Eric, Mizzi, Jessica, Murray, Kevin D, Nahum, Joshua R, Nanlohy, Kaben, Nederbragt, Alexander Johan, Ortiz-Zuazaga, Humberto, Ory, Jeramia, Pell, Jason, Pepe-Ranney, Charles, Russ, Zachary N, Schwarz, Erich, Scott, Camille, Seaman, Josiah, Sievert, Scott, Simpson, Jared, Skennerton, Connor T, Spencer, James, Srinivasan, Ramakrishnan, Standage, Daniel, Stapleton, James A, Steinman, Susan R, Stein, Joe, Taylor, Benjamin, Trimble, Will, Wiencko, Heather L, Wright, Michael, Wyss, Brian, Zhang, Qingpeng, zyme, en, Brown, C. Titus
Published in F1000 research (2015)
Published in F1000 research (2015)
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Journal Article
Seeing and Experiencing Relativity--A New Tool for Teaching?
Kortemeyer, Gerd, Fish, Jordan, Hacker, Jesse, Kienle, Justin, Kobylarek, Alexander, Sigler, Michael, Wierenga, Bert, Cheu, Ryan, Kim, Ebae, Sherin, Zach, Sidhu, Sonny, Tan, Philip
Published in The Physics teacher (01.11.2013)
Published in The Physics teacher (01.11.2013)
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Journal Article
Novelty estimation in developmental networks: Acetylcholine and norepinephrine
Fish, Jordan, Ossian, Lisa, Juyang Weng
Published in The 2013 International Joint Conference on Neural Networks (IJCNN) (01.08.2013)
Published in The 2013 International Joint Conference on Neural Networks (IJCNN) (01.08.2013)
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Conference Proceeding
Ecological Patterns of italic toggle="yes">nifH /italic> Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool
Qiong Wang, John F. Quensen, Jordan A. Fish, Tae Kwon Lee, Yanni Sun, James M. Tiedje, James R. Cole
Published in mBio (01.11.2013)
Published in mBio (01.11.2013)
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Journal Article