Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models
Palsson, Bernhard Ø, Lewis, Nathan E, Hixson, Kim K, Conrad, Tom M, Lerman, Joshua A, Charusanti, Pep, Polpitiya, Ashoka D, Adkins, Joshua N, Schramm, Gunnar, Purvine, Samuel O, Lopez-Ferrer, Daniel, Weitz, Karl K, Eils, Roland, König, Rainer, Smith, Richard D
Published in Molecular systems biology (27.07.2010)
Published in Molecular systems biology (27.07.2010)
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Fast Monitoring of Species-Specific Peptide Biomarkers Using High-Intensity-Focused-Ultrasound-Assisted Tryptic Digestion and Selected MS/MS Ion Monitoring
Carrera, Mónica, Cañas, Benito, López-Ferrer, Daniel, Piñeiro, Carmen, Vázquez, Jesús, Gallardo, José M
Published in Analytical chemistry (Washington) (15.07.2011)
Published in Analytical chemistry (Washington) (15.07.2011)
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Nanobiocatalysis for protein digestion in proteomic analysis
Kim, Jungbae, Kim, Byoung Chan, Lopez-Ferrer, Daniel, Petritis, Konstantinos, Smith, Richard D
Published in Proteomics (Weinheim) (01.02.2010)
Published in Proteomics (Weinheim) (01.02.2010)
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Highly stable trypsin-aggregate coatings on polymer nanofibers for repeated protein digestion
Kim, Byoung Chan, Lopez-Ferrer, Daniel, Lee, Sang-Mok, Ahn, Hye-Kyung, Nair, Sujith, Kim, Seong H, Kim, Beom Soo, Petritis, Konstantinos, Camp, David G, Grate, Jay W, Smith, Richard D, Koo, Yoon-Mo, Gu, Man Bock, Kim, Jungbae
Published in Proteomics (Weinheim) (01.04.2009)
Published in Proteomics (Weinheim) (01.04.2009)
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On-line Digestion System for Protein Characterization and Proteome Analysis
López-Ferrer, Daniel, Petritis, Konstantinos, Lourette, Natacha M, Clowers, Brian, Hixson, Kim K, Heibeck, Tyler, Prior, David C, Paša-Tolić, Ljiljana, Camp, David G, Belov, Mikhail E, Smith, Richard D
Published in Analytical chemistry (Washington) (01.12.2008)
Published in Analytical chemistry (Washington) (01.12.2008)
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Intact NIST monoclonal antibody characterization-Proteoforms, glycoforms-Using CE-MS and CE-LIF
Chen, Chien-Hsun, Feng, Huatao, Guo, Rui, Li, Pingjing, Laserna, Anna Karen C., Ji, Ya, Ng, Bao Hui, Li, Sam Fong Yau, Khan, Shaheer H., Paulus, Aran, Chen, Shiaw-Min, Karger, Achim E., Wenz, Michael, Ferrer, Daniel Lopez, Huhmer, Andreas F., Krupke, Andreas
Published in Cogent chemistry (01.01.2018)
Published in Cogent chemistry (01.01.2018)
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Rapid Sample Processing for LC-MS-Based Quantitative Proteomics Using High Intensity Focused Ultrasound
López-Ferrer, Daniel, Heibeck, Tyler H, Petritis, Konstantinos, Hixson, Kim K, Qian, Weijun, Monroe, Matthew E, Mayampurath, Anoop, Moore, Ronald J, Belov, Mikhail E, Camp, David G, Smith, Richard D
Published in Journal of proteome research (01.09.2008)
Published in Journal of proteome research (01.09.2008)
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INFERYS rescoring: Boosting peptide identifications and scoring confidence of database search results
Zolg, Daniel P, Gessulat, Siegfried, Paschke, Carmen, Graber, Michael, Rathke-Kuhnert, Magnus, Seefried, Florian, Fitzemeier, Kai, Berg, Frank, Lopez-Ferrer, Daniel, Horn, David, Henrich, Christoph, Huhmer, Andreas, Delanghe, Bernard, Frejno, Martin
Published in Rapid communications in mass spectrometry (28.06.2021)
Published in Rapid communications in mass spectrometry (28.06.2021)
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High-Density, Targeted Monitoring of Tyrosine Phosphorylation Reveals Activated Signaling Networks in Human Tumors
Stopfer, Lauren E, Flower, Cameron T, Gajadhar, Aaron S, Patel, Bhavin, Gallien, Sebastien, Lopez-Ferrer, Daniel, White, Forest M
Published in Cancer research (Chicago, Ill.) (01.05.2021)
Published in Cancer research (Chicago, Ill.) (01.05.2021)
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Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
Wang, Yuexi, Yang, Feng, Gritsenko, Marina A., Wang, Yingchun, Clauss, Therese, Liu, Tao, Shen, Yufeng, Monroe, Matthew E., Lopez-Ferrer, Daniel, Reno, Theresa, Moore, Ronald J., Klemke, Richard L., Camp II, David G., Smith, Richard D.
Published in Proteomics (Weinheim) (01.05.2011)
Published in Proteomics (Weinheim) (01.05.2011)
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SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis
Bi, Yang, Shrestha, Ruben, Zhang, Zhenzhen, Hsu, Chuan-Chih, Reyes, Andres V, Karunadasa, Sumudu, Baker, Peter R, Maynard, Jason C, Liu, Yang, Hakimi, Amirmansoor, Lopez-Ferrer, Daniel, Hassan, Tahmid, Chalkley, Robert J, Xu, Shou-Ling, Wang, Zhi-Yong
Published in The Plant cell (20.04.2023)
Published in The Plant cell (20.04.2023)
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Dynamic metabolic reprogramming in dendritic cells: An early response to influenza infection that is essential for effector function
Rezinciuc, Svetlana, Bezavada, Lavanya, Bahadoran, Azadeh, Duan, Susu, Wang, Ruoning, Lopez-Ferrer, Daniel, Finkelstein, David, McGargill, Maureen A, Green, Douglas R, Pasa-Tolic, Ljiljana, Smallwood, Heather S
Published in PLoS pathogens (26.10.2020)
Published in PLoS pathogens (26.10.2020)
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Transcriptomic and proteomic profiling of glial versus neuronal Dube3a overexpression reveals common molecular changes in gliopathic epilepsies
Hope, Kevin A., Johnson, Daniel, Miller, P. Winston, Lopez-Ferrer, Daniel, Kakhniashvili, David, Reiter, Lawrence T.
Published in Neurobiology of disease (01.07.2020)
Published in Neurobiology of disease (01.07.2020)
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Trends in sample preparation for classical and second generation proteomics
Cañas, Benito, Piñeiro, Carmen, Calvo, Enrique, López-Ferrer, Daniel, Gallardo, Jose Manuel
Published in Journal of Chromatography A (15.06.2007)
Published in Journal of Chromatography A (15.06.2007)
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Pressurized Pepsin Digestion in Proteomics
López-Ferrer, Daniel, Petritis, Konstantinos, Robinson, Errol W., Hixson, Kim K., Tian, Zhixin, Lee, Jung Hwa, Lee, Sang-Won, Tolić, Nikola, Weitz, Karl K., Belov, Mikhail E., Smith, Richard D., Paša-Tolić, Ljiljana
Published in Molecular & cellular proteomics (01.02.2011)
Published in Molecular & cellular proteomics (01.02.2011)
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S-Nitrosylation of Hsp90 Promotes the Inhibition of Its ATPase and Endothelial Nitric Oxide Synthase Regulatory Activities
Martínez-Ruiz, Antonio, Villanueva, Laura, de Orduña, Cecilia González, López-Ferrer, Daniel, Higueras, María Ángeles, Tarín, Carlos, Rodríguez-Crespo, Ignacio, Vázquez, Jesús, Lamas, Santiago, Ignarro, Louis J.
Published in Proceedings of the National Academy of Sciences - PNAS (14.06.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (14.06.2005)
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Journal Article
Application of Pressurized Solvents for Ultrafast Trypsin Hydrolysis in Proteomics: Proteomics on the Fly
López-Ferrer, Daniel, Petritis, Konstantinos, Hixson, Kim K, Heibeck, Tyler H, Moore, Ronald J, Belov, Mikhail E, Camp, David G, Smith, Richard D
Published in Journal of proteome research (01.08.2008)
Published in Journal of proteome research (01.08.2008)
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Journal Article
Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics
López-Ferrer, Daniel, Petritis, Konstantinos, Robinson, Errol W, Hixson, Kim K, Tian, Zhixin, Lee, Jung Hwa, Lee, Sang-Won, Tolić, Nikola, Weitz, Karl K, Belov, Mikhail E, Smith, Richard D, Pasa-Tolić, Ljiljana
Published in Molecular & cellular proteomics (01.02.2011)
Published in Molecular & cellular proteomics (01.02.2011)
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Journal Article
Rapid and efficient protein digestion using trypsin-coated magnetic nanoparticles under pressure cycles
Lee, Byoungsoo, Lopez-Ferrer, Daniel, Kim, Byoung Chan, Na, Hyon Bin, Park, Yong Il, Weitz, Karl K, Warner, Marvin G, Hyeon, Taeghwan, Lee, Sang-Won, Smith, Richard D, Kim, Jungbae
Published in Proteomics (Weinheim) (01.01.2011)
Published in Proteomics (Weinheim) (01.01.2011)
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