Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing
Hjelmsø, Mathis Hjort, Hellmér, Maria, Fernandez-Cassi, Xavier, Timoneda, Natàlia, Lukjancenko, Oksana, Seidel, Michael, Elsässer, Dennis, Aarestrup, Frank M, Löfström, Charlotta, Bofill-Mas, Sílvia, Abril, Josep F, Girones, Rosina, Schultz, Anna Charlotte
Published in PloS one (18.01.2017)
Published in PloS one (18.01.2017)
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Journal Article
Characterisation of the sewage virome: comparison of NGS tools and occurrence of significant pathogens
Martínez-Puchol, Sandra, Rusiñol, Marta, Fernández-Cassi, Xavier, Timoneda, Natàlia, Itarte, Marta, Andrés, Cristina, Antón, Andrés, Abril, Josep F., Girones, Rosina, Bofill-Mas, Sílvia
Published in The Science of the total environment (15.04.2020)
Published in The Science of the total environment (15.04.2020)
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Journal Article
Wastewater-Based Estimation of the Effective Reproductive Number of SARS-CoV-2
Huisman, Jana S, Scire, Jérémie, Caduff, Lea, Fernandez-Cassi, Xavier, Ganesanandamoorthy, Pravin, Kull, Anina, Scheidegger, Andreas, Stachler, Elyse, Boehm, Alexandria B, Hughes, Bridgette, Knudson, Alisha, Topol, Aaron, Wigginton, Krista R, Wolfe, Marlene K, Kohn, Tamar, Ort, Christoph, Stadler, Tanja, Julian, Timothy R
Published in Environmental health perspectives (01.05.2022)
Published in Environmental health perspectives (01.05.2022)
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Journal Article
Application of human and animal viral microbial source tracking tools in fresh and marine waters from five different geographical areas
Rusiñol, Marta, Fernandez-Cassi, Xavier, Hundesa, Ayalkibet, Vieira, Carmen, Kern, Anita, Eriksson, Irene, Ziros, Panos, Kay, David, Miagostovich, Marize, Vargha, Marta, Allard, Annika, Vantarakis, Apostolos, Wyn-Jones, Peter, Bofill-Mas, Sílvia, Girones, Rosina
Published in Water research (Oxford) (01.08.2014)
Published in Water research (Oxford) (01.08.2014)
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Journal Article
Metagenomic analysis of viruses, bacteria and protozoa in irrigation water
Rusiñol, Marta, Martínez-Puchol, Sandra, Timoneda, Natalia, Fernández-Cassi, Xavier, Pérez-Cataluña, Alba, Fernández-Bravo, Ana, Moreno-Mesonero, Laura, Moreno, Yolanda, Alonso, Jose Luís, Figueras, Maria José, Abril, Josep Francesc, Bofill-Mas, Sílvia, Girones, Rosina
Published in International journal of hygiene and environmental health (01.03.2020)
Published in International journal of hygiene and environmental health (01.03.2020)
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Journal Article
Evidence of viral dissemination and seasonality in a Mediterranean river catchment: Implications for water pollution management
Rusiñol, Marta, Fernandez-Cassi, Xavier, Timoneda, Natàlia, Carratalà, Anna, Abril, Josep Francesc, Silvera, Carolina, Figueras, Maria José, Gelati, Emiliano, Rodó, Xavier, Kay, David, Wyn-Jones, Peter, Bofill-Mas, Sílvia, Girones, Rosina
Published in Journal of environmental management (15.08.2015)
Published in Journal of environmental management (15.08.2015)
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Journal Article
Quantification of Human and Animal Viruses to Differentiate the Origin of the Fecal Contamination Present in Environmental Samples
Hundesa, Ayalkibet, Carratalà, Anna, Fernandez-Cassi, Xavier, Rusiñol, Marta, Bofill-Mas, S., Girones, Rosina
Published in BioMed research international (01.01.2013)
Published in BioMed research international (01.01.2013)
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Journal Article
Wastewater monitoring outperforms case numbers as a tool to track COVID-19 incidence dynamics when test positivity rates are high
Fernandez-Cassi, Xavier, Scheidegger, Andreas, Bänziger, Carola, Cariti, Federica, Tuñas Corzon, Alex, Ganesanandamoorthy, Pravin, Lemaitre, Joseph C., Ort, Christoph, Julian, Timothy R., Kohn, Tamar
Published in Water research (Oxford) (15.07.2021)
Published in Water research (Oxford) (15.07.2021)
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Journal Article
Removal of Waterborne Viruses by Tetrahymena pyriformis Is Virus-Specific and Coincides with Changes in Protist Swimming Speed
Olive, Margot, Moerman, Felix, Fernandez-Cassi, Xavier, Altermatt, Florian, Kohn, Tamar
Published in Environmental science & technology (05.04.2022)
Published in Environmental science & technology (05.04.2022)
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Journal Article
Waterborne virus transport and the associated risks in a large lake
Li, Chaojie, Sylvestre, Émile, Fernandez-Cassi, Xavier, Julian, Timothy R., Kohn, Tamar
Published in Water research (Oxford) (01.02.2023)
Published in Water research (Oxford) (01.02.2023)
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Journal Article
Viral Transfer and Inactivation through Zooplankton Trophic Interactions
Ismail, Niveen S, Olive, Margot, Fernandez-Cassi, Xavier, Bachmann, Virginie, Kohn, Tamar
Published in Environmental science & technology (04.08.2020)
Published in Environmental science & technology (04.08.2020)
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Journal Article
Wastewater-based surveillance for Hepatitis A virus, Enterovirus, Poliovirus, and SARS-CoV-2 in São Tomé and Príncipe: A pilot study
Toancha, Katia, Borges, Adjaia, Lázaro, Lazismino, Teixeira, Nilton, Lima, Anery Katia, Gonçalves, Anabela, Winter, Doris, Santos, Asmiralda, do Nascimento, Marcos, de Sousa, Andreza Batista, May, Jürgen, Sequeira, Yardlene Sacramento, Neto, Rosa Maria Afonso, Fernandez-Cassi, Xavier, Schuldt, Kathrin
Published in The Science of the total environment (10.12.2024)
Published in The Science of the total environment (10.12.2024)
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Journal Article
Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC
Jahn, Katharina, Dreifuss, David, Topolsky, Ivan, Kull, Anina, Ganesanandamoorthy, Pravin, Fernandez-Cassi, Xavier, Bänziger, Carola, Devaux, Alexander J., Stachler, Elyse, Caduff, Lea, Cariti, Federica, Corzón, Alex Tuñas, Fuhrmann, Lara, Chen, Chaoran, Jablonski, Kim Philipp, Nadeau, Sarah, Feldkamp, Mirjam, Beisel, Christian, Aquino, Catharine, Stadler, Tanja, Ort, Christoph, Kohn, Tamar, Julian, Timothy R., Beerenwinkel, Niko
Published in Nature microbiology (01.08.2022)
Published in Nature microbiology (01.08.2022)
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Journal Article
Inferring transmission fitness advantage of SARS-CoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021
Caduff, Lea, Dreifuss, David, Schindler, Tobias, Devaux, Alexander J, Ganesanandamoorthy, Pravin, Kull, Anina, Stachler, Elyse, Fernandez-Cassi, Xavier, Beerenwinkel, Niko, Kohn, Tamar, Ort, Christoph, Julian, Timothy R
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (10.03.2022)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (10.03.2022)
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Journal Article
Health risks derived from consumption of lettuces irrigated with tertiary effluent containing norovirus
Sales-Ortells, Helena, Fernandez-Cassi, Xavier, Timoneda, Natàlia, Dürig, Wiebke, Girones, Rosina, Medema, Gertjan
Published in Food research international (01.02.2015)
Published in Food research international (01.02.2015)
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Journal Article
Phylodynamics of Merkel-cell polyomavirus and human polyomavirus 6: A long-term history with humans
Torres, Carolina, Barrios, Melina Elizabeth, Cammarata, Robertina Viviana, Victoria, Matías, Fernandez-Cassi, Xavier, Bofill-Mas, Silvia, Colina, Rodney, Blanco Fernández, María Dolores, Mbayed, Viviana Andrea
Published in Molecular phylogenetics and evolution (01.09.2018)
Published in Molecular phylogenetics and evolution (01.09.2018)
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Journal Article