The chromatin environment shapes DNA replication origin organization and defines origin classes
Cayrou, Christelle, Ballester, Benoit, Peiffer, Isabelle, Fenouil, Romain, Coulombe, Philippe, Andrau, Jean-Christophe, van Helden, Jacques, Méchali, Marcel
Published in Genome research (01.12.2015)
Published in Genome research (01.12.2015)
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Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells
Soucie, Erinn L., Weng, Ziming, Geirsdóttir, Laufey, Molawi, Kaaweh, Maurizio, Julien, Fenouil, Romain, Mossadegh-Keller, Noushine, Gimenez, Gregory, VanHille, Laurent, Beniazza, Meryam, Favret, Jeremy, Berruyer, Carole, Perrin, Pierre, Hacohen, Nir, Andrau, J.-C., Ferrier, Pierre, Dubreuil, Patrice, Sidow, Arend, Sieweke, Michael H.
Published in Science (American Association for the Advancement of Science) (12.02.2016)
Published in Science (American Association for the Advancement of Science) (12.02.2016)
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Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation
Rialdi, Alex, Campisi, Laura, Zhao, Nan, Lagda, Arvin Cesar, Pietzsch, Colette, Ho, Jessica Sook Yuin, Martinez-Gil, Luis, Fenouil, Romain, Chen, Xiaoting, Edwards, Megan, Metreveli, Giorgi, Jordan, Stefan, Peralta, Zuleyma, Munoz-Fontela, Cesar, Bouvier, Nicole, Merad, Miriam, Jin, Jian, Weirauch, Matthew, Heinz, Sven, Benner, Chris, van Bakel, Harm, Basler, Christopher, García-Sastre, Adolfo, Bukreyev, Alexander, Marazzi, Ivan
Published in Science (American Association for the Advancement of Science) (27.05.2016)
Published in Science (American Association for the Advancement of Science) (27.05.2016)
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Journal Article
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
Gut, Ivo, Ferrier, Pierre, Andrau, Jean-Christophe, Koch, Frederic, Fenouil, Romain, Gut, Marta, Cauchy, Pierre, Albert, Thomas K, Zacarias-Cabeza, Joaquin, Spicuglia, Salvatore, de la Chapelle, Albane Lamy, Heidemann, Martin, Hintermair, Corinna, Eick, Dirk
Published in Nature structural & molecular biology (01.08.2011)
Published in Nature structural & molecular biology (01.08.2011)
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Journal Article
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
Fenouil, Romain, Cauchy, Pierre, Koch, Frederic, Descostes, Nicolas, Cabeza, Joaquin Zacarias, Innocenti, Charlène, Ferrier, Pierre, Spicuglia, Salvatore, Gut, Marta, Gut, Ivo, Andrau, Jean-Christophe
Published in Genome research (01.12.2012)
Published in Genome research (01.12.2012)
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Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36
Andrau, Jean-Christophe, Ferrier, Pierre, Carmo-Fonseca, Maria, de Almeida, Sérgio Fernandes, Grosso, Ana Rita, Koch, Frederic, Fenouil, Romain, Carvalho, Sílvia, Andrade, Jorge, Levezinho, Helena, Gut, Marta, Eick, Dirk, Gut, Ivo
Published in Nature structural & molecular biology (01.09.2011)
Published in Nature structural & molecular biology (01.09.2011)
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Journal Article
Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells
Descostes, Nicolas, Heidemann, Martin, Spinelli, Lionel, Schüller, Roland, Maqbool, Muhammad Ahmad, Fenouil, Romain, Koch, Frederic, Innocenti, Charlène, Gut, Marta, Gut, Ivo, Eick, Dirk, Andrau, Jean-Christophe
Published in eLife (09.05.2014)
Published in eLife (09.05.2014)
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Journal Article
Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation
Hintermair, Corinna, Heidemann, Martin, Koch, Frederic, Descostes, Nicolas, Gut, Marta, Gut, Ivo, Fenouil, Romain, Ferrier, Pierre, Flatley, Andrew, Kremmer, Elisabeth, Chapman, Rob D, Andrau, Jean-Christophe, Eick, Dirk
Published in The EMBO journal (13.06.2012)
Published in The EMBO journal (13.06.2012)
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Journal Article
The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity
Rialdi, Alexander, Hultquist, Judd, Jimenez-Morales, David, Peralta, Zuleyma, Campisi, Laura, Fenouil, Romain, Moshkina, Natasha, Wang, Zhen Zhen, Laffleur, Brice, Kaake, Robyn M., McGregor, Michael J., Haas, Kelsey, Pefanis, Evangelos, Albrecht, Randy A., Pache, Lars, Chanda, Sumit, Jen, Joanna, Ochando, Jordi, Byun, Minji, Basu, Uttiya, García-Sastre, Adolfo, Krogan, Nevan, van Bakel, Harm, Marazzi, Ivan
Published in Cell (04.05.2017)
Published in Cell (04.05.2017)
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Responses to the Hydrostatic Pressure of Surface and Subsurface Strains of Pseudothermotoga elfii Revealing the Piezophilic Nature of the Strain Originating From an Oil-Producing Well
Roumagnac, Marie, Pradel, Nathalie, Bartoli, Manon, Garel, Marc, Jones, Aaron A, Armougom, Fabrice, Fenouil, Romain, Tamburini, Christian, Ollivier, Bernard, Summers, Zarath M, Dolla, Alain
Published in Frontiers in microbiology (04.12.2020)
Published in Frontiers in microbiology (04.12.2020)
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Adaptation Strategies to High Hydrostatic Pressures in Pseudothermotoga species Revealed by Transcriptional Analyses
Fenouil, Romain, Pradel, Nathalie, Belahbib, Hassiba, Roumagnac, Marie, Bartoli, Manon, Ben Hania, Wajdi, Denis, Yann, Garel, Marc, Tamburini, Christian, Ollivier, Bernard, Summers, Zarath, Armougom, Fabrice, Dolla, Alain
Published in Microorganisms (Basel) (17.03.2023)
Published in Microorganisms (Basel) (17.03.2023)
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Non-classical monocytes scavenge the growth factor CSF1 from endothelial cells in the peripheral vascular tree to ensure survival and homeostasis
Thierry, Guilhem R., Baudon, Elisa M., Bijnen, Mitchell, Bellomo, Alicia, Lagueyrie, Marine, Mondor, Isabelle, Simonnet, Louise, Carrette, Florent, Fenouil, Romain, Keshvari, Sahar, Hume, David A., Dombrowicz, David, Bajenoff, Marc
Published in Immunity (Cambridge, Mass.) (10.09.2024)
Published in Immunity (Cambridge, Mass.) (10.09.2024)
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Journal Article
Argonaute proteins couple chromatin silencing to alternative splicing
Ameyar-Zazoua, Maya, Rachez, Christophe, Souidi, Mouloud, Robin, Philippe, Fritsch, Lauriane, Young, Robert, Morozova, Nadya, Fenouil, Romain, Descostes, Nicolas, Andrau, Jean-Christophe, Mathieu, Jacques, Hamiche, Ali, Ait-Si-Ali, Slimane, Muchardt, Christian, Batsché, Eric, Harel-Bellan, Annick
Published in Nature structural & molecular biology (01.10.2012)
Published in Nature structural & molecular biology (01.10.2012)
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Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection
Heaton, Nicholas S., Moshkina, Natasha, Fenouil, Romain, Gardner, Thomas J., Aguirre, Sebastian, Shah, Priya S., Zhao, Nan, Manganaro, Lara, Hultquist, Judd F., Noel, Justine, Sachs, David, Hamilton, Jennifer, Leon, Paul E., Chawdury, Amit, Tripathi, Shashank, Melegari, Camilla, Campisi, Laura, Hai, Rong, Metreveli, Giorgi, Gamarnik, Andrea V., García-Sastre, Adolfo, Greenbaum, Benjamin, Simon, Viviana, Fernandez-Sesma, Ana, Krogan, Nevan J., Mulder, Lubbertus C.F., van Bakel, Harm, Tortorella, Domenico, Taunton, Jack, Palese, Peter, Marazzi, Ivan
Published in Immunity (Cambridge, Mass.) (19.01.2016)
Published in Immunity (Cambridge, Mass.) (19.01.2016)
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Peyer's patch phagocytes acquire specific transcriptional programs that influence their maturation and activation profiles
Arroyo Portilla, Cynthia, Fenouil, Romain, Wagner, Camille, Luciani, Cécilia, Lagier, Margaux, Da Silva, Clément, Hidalgo-Villeda, Fanny, Spinelli, Lionel, Fallet, Mathieu, Tomas, Julie, Gorvel, Jean-Pierre, Lelouard, Hugues
Published in Mucosal immunology (01.08.2023)
Published in Mucosal immunology (01.08.2023)
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A Single Cell Atlas of Diffuse Large B Cell Lymphomas Reveals Distinct Cellular States Predictive of Outcomes
Baaklini, Sabrina, Sarrabay, Alexandre, Barthelemy, Camille, Dahbi, Laila, Gil, Laurine, Mossadegh-Keller, Noushin, Navarro, Jean-Marc, Huber, Caroline, Fenouil, Romain, Escaliere, Bertrand, Trombetta, Romane, Pujol, Marine, Gaulard, Philippe, Riviere, Benjamin, Dartigues, Peggy, Llamas Gutierrez, Francesco, Pangault, Celine, Jardin, Fabrice, Lemonnier, Francois, Brisou, Gabriel, Haioun, Corinne, Gravelle, Pauline, Laurent, Camille, Spinelli, Lionel, Huang, C Chris, Stokes, Matthew E, Seth, Sahil, Ortiz, Maria, Gandhi, Anita K., Nadel, Bertrand, Milpied, Pierre, Roulland, Sandrine
Published in Blood (02.11.2023)
Published in Blood (02.11.2023)
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Journal Article
Influenza virus infection causes global RNAPII termination defects
Zhao, Nan, Sebastiano, Vittorio, Moshkina, Natasha, Mena, Nacho, Hultquist, Judd, Jimenez-Morales, David, Ma, Yixuan, Rialdi, Alex, Albrecht, Randy, Fenouil, Romain, Sánchez-Aparicio, Maria Teresa, Ayllon, Juan, Ravisankar, Sweta, Haddad, Bahareh, Ho, Jessica Sook Yuin, Low, Diana, Jin, Jian, Yurchenko, Vyacheslav, Prinjha, Rab K, Tarakhovsky, Alexander, Squatrito, Massimo, Pinto, Dalila, Allette, Kimaada, Byun, Minji, Smith, Melissa Laird, Sebra, Robert, Guccione, Ernesto, Tumpey, Terrence, Krogan, Nevan, Greenbaum, Benjamin, van Bakel, Harm, García-Sastre, Adolfo, Marazzi, Ivan
Published in Nature structural & molecular biology (01.09.2018)
Published in Nature structural & molecular biology (01.09.2018)
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Journal Article
Pasha: a versatile R package for piling chromatin HTS data
Fenouil, Romain, Descostes, Nicolas, Spinelli, Lionel, Koch, Frederic, Maqbool, Muhammad Ahmad, Benoukraf, Touati, Cauchy, Pierre, Innocenti, Charlène, Ferrier, Pierre, Andrau, Jean-Christophe
Published in Bioinformatics (Oxford, England) (15.08.2016)
Published in Bioinformatics (Oxford, England) (15.08.2016)
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Journal Article
Dynamic recruitment of Ets1 to both nucleosome-occupied and -depleted enhancer regions mediates a transcriptional program switch during early T-cell differentiation
Cauchy, Pierre, Maqbool, Muhammad A, Zacarias-Cabeza, Joaquin, Vanhille, Laurent, Koch, Frederic, Fenouil, Romain, Gut, Marta, Gut, Ivo, Santana, Maria A, Griffon, Aurélien, Imbert, Jean, Moraes-Cabé, Carolina, Bories, Jean-Christophe, Ferrier, Pierre, Spicuglia, Salvatore, Andrau, Jean-Christophe
Published in Nucleic acids research (05.05.2016)
Published in Nucleic acids research (05.05.2016)
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Journal Article
Divergent transcription is associated with promoters of transcriptional regulators
Lepoivre, Cyrille, Belhocine, Mohamed, Bergon, Aurélie, Griffon, Aurélien, Yammine, Miriam, Vanhille, Laurent, Zacarias-Cabeza, Joaquin, Garibal, Marc-Antoine, Koch, Frederic, Maqbool, Muhammad Ahmad, Fenouil, Romain, Loriod, Beatrice, Holota, Hélène, Gut, Marta, Gut, Ivo, Imbert, Jean, Andrau, Jean-Christophe, Puthier, Denis, Spicuglia, Salvatore
Published in BMC genomics (23.12.2013)
Published in BMC genomics (23.12.2013)
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