A longitudinal footprint of genetic epilepsies using automated electronic medical record interpretation
Ganesan, Shiva, Galer, Peter D, Helbig, Katherine L, McKeown, Sarah E, O'Brien, Margaret, Gonzalez, Alexander K, Felmeister, Alex S, Khankhanian, Pouya, Ellis, Colin A, Helbig, Ingo
Published in Genetics in medicine (01.12.2020)
Published in Genetics in medicine (01.12.2020)
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Journal Article
Phenotypic homogeneity in childhood epilepsies evolves in gene-specific patterns across 3251 patient-years of clinical data
Lewis-Smith, David, Ganesan, Shiva, Galer, Peter D, Helbig, Katherine L, McKeown, Sarah E, O'Brien, Margaret, Khankhanian, Pouya, Kaufman, Michael C, Gonzalez, Alexander K, Felmeister, Alex S, Krause, Roland, Ellis, Colin A, Helbig, Ingo
Published in European journal of human genetics : EJHG (01.11.2021)
Published in European journal of human genetics : EJHG (01.11.2021)
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Journal Article
The biorepository portal toolkit: an honest brokered, modular service oriented software tool set for biospecimen-driven translational research
Felmeister, Alex S, Masino, Aaron J, Rivera, Tyler J, Resnick, Adam C, Pennington, Jeffrey W
Published in BMC genomics (18.08.2016)
Published in BMC genomics (18.08.2016)
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Journal Article
Correction: A longitudinal footprint of genetic epilepsies using automated electronic medical record interpretation
Ganesan, Shiva, Galer, Peter D, Helbig, Katherine L, McKeown, Sarah E, O'Brien, Margaret, Gonzalez, Alexander K, Felmeister, Alex S, Khankhanian, Pouya, Ellis, Colin A, Helbig, Ingo
Published in Genetics in medicine (01.11.2020)
Published in Genetics in medicine (01.11.2020)
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Journal Article
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia
Chen, Changya, Yu, Wenbao, Alikarami, Fatemeh, Qiu, Qi, Chen, Chia-hui, Flournoy, Jennifer, Gao, Peng, Uzun, Yasin, Fang, Li, Davenport, James W., Hu, Yuxuan, Zhu, Qin, Wang, Kai, Libbrecht, Clara, Felmeister, Alex, Rozich, Isaiah, Ding, Yang-yang, Hunger, Stephen P., Felix, Carolyn A., Wu, Hao, Brown, Patrick A., Guest, Erin M., Barrett, David M., Bernt, Kathrin M., Tan, Kai
Published in Blood (07.04.2022)
Published in Blood (07.04.2022)
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Journal Article
Single-Cell Multiomics Reveals Increased Plasticity, Resistant Populations and Stem-Cell-like Blasts in KMT2A-Rearranged Leukemia
Chen, Changya, Yu, Wenbao, Alikarami, Fatemeh, Qiu, Qi, Chen, Chia-hui, Flournoy, Jennifer, Gao, Peng, Uzun, Yasin, Fang, Li, Hu, Yuxuan, Zhu, Qin, Wang, Kai, Libbrecht, Clara, Felmeister, Alex, Rozich, Isaiah, Ding, Yang-yang, Hunger, Stephen P, Wu, Hao, Brown, Patrick A., Guest, Erin, Barrett, David M, Bernt, Kathrin M., Tan, Kai
Published in Blood (23.11.2021)
Published in Blood (23.11.2021)
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Journal Article
Pediatric high-grade glioma resources from the Children’s Brain Tumor Tissue Consortium
Ijaz, Heba, Koptyra, Mateusz, Gaonkar, Krutika S, Rokita, Jo Lynne, Baubet, Valerie P, Tauhid, Lamiya, Zhu, Yuankun, Brown, Miguel, Lopez, Gonzalo, Zhang, Bo, Diskin, Sharon J, Vaksman, Zalman, Mason, Jennifer L, Appert, Elizabeth, Lilly, Jena, Lulla, Rishi, De Raedt, Thomas, Heath, Allison P, Felmeister, Alex, Raman, Pichai, Nazarian, Javad, Santi, Maria Rita, Storm, Phillip B, Resnick, Adam, Waanders, Angela J, Cole, Kristina A
Published in Neuro-oncology (Charlottesville, Va.) (11.01.2020)
Published in Neuro-oncology (Charlottesville, Va.) (11.01.2020)
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Journal Article
DIPG-51. BLACKFYNN: A SECURE, CLOUD-BASED PLATFORM FOR SHARING AND ANALYZING RESEARCH READY DATA FOR PEDIATRIC CNS CANCERS
Johnson, Courtney, Christini, Amanda, Felmeister, Alex, Baglieri, Chris, Kambhampati, Madhuri, Waanders, Angela, Mason, Jennifer, Packer, Roger, Resnick, Adam, Nazarian, Javad
Published in Neuro-oncology (Charlottesville, Va.) (22.06.2018)
Published in Neuro-oncology (Charlottesville, Va.) (22.06.2018)
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Journal Article
Scalable biobanking: A modular electronic Honest Broker and Biorepository for integrated clinical, specimen and genomic research
Felmeister, Alex S., Rivera, Tyler J., Masino, Aaron J., Resnick, Adam C., Pennington, Jeffrey W.
Published in 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2015)
Published in 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2015)
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Conference Proceeding
GENE-12. THE CHILDREN’S BRAIN TUMOR TISSUE CONSORTIUM (CBTTC) INFRASTRUCTURE FACILITATES COLLABORATIVE RESEARCH IN PEDIATRIC CENTRAL NERVOUS SYSTEM TUMORS
Felmeister, Alex, Lulla, Rishi, Waanders, Angela, Raman, Pichai, Santi, Mariarita, Lilly, Jena, Mason, Jennifer, Nazarian, Javad, Resnick, Adam
Published in Neuro-oncology (Charlottesville, Va.) (01.06.2017)
Published in Neuro-oncology (Charlottesville, Va.) (01.06.2017)
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Journal Article
Abstract 3667: The Pediatric Brain Tumor Atlas - Transforming the landscape of research
Zhu, Yuankun, Guo, Yiran, Heath, Allison P., Raman, Pichai, Appert, Elizabeth, Mason, Jennifer, Zhang, Bo, Kalletla, Karthik, Brown, Miguel A., Singh, Natasha, Farrow, Bailey K., Killada, Parimala, Kim, Meen Chul, Felmeister, Alex, Koptyra, Mateusz P., Mueller, Sabine, Prados, Michael, Lilly, Jena V., Lulla, Rishi, Resnick, Adam C., Nazarian, Javad, Storm, Phillip B., Waanders, Angela J.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Abstract LB-008: The Pediatric Brain Tumor Atlas: building an integrated, multi-platform data-rich ecosystem for collaborative discovery in the cloud
Resnick, Adam C., Storm, Phillip B., Waanders, Angela J., Lilly, Jena V., Lulla, Rishi R., Mueller, Sabine, Prados, Michael, Sender, Leonard S., Heath, Allison, Felmeister, Alex S., Cros, Anthony, Zhu, Yuankun, Raman, Pichai
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
Abstract 2593: Accelerating pediatric brain tumor research through team science solutions
Christini, Amanda, Waanders, Angela J., Wagenaar, Joost B., Felmeister, Alex S., Santi, Mariarita, Wadhwani, Nitin R., Mason, Jennifer L., Koptyra, Mateusz P., Lilly, Jena V., Pennington, Jeffrey W., Lulla, Rishi R., Resnick, Adam C.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Journal Article
PDTM-16. PEDIATRIC HIGH GRADE GLIOMA RESOURCES FROM THE CHILDREN’S BRAIN TUMOR TISSUE CONSORTIUM (CBTTC) AND PEDIATRIC BRAIN TUMOR ATLAS (PBTA)
Ijaz, Heba, Koptyra, Mateusz, Gaonkar, Krutika, Lynne Rokita, Jo, Baubet, Valerie, Tauhid, Lamiya, Zhu, Yuankun, Brown, Miguel, Lopez, Gonzalo, Zhang, Bo, Diskin, Sharon, Vaksman, Zalman, Mason, Jennifer, Appert, Elizabeth, Lilly, Jena, Lulla, Rishi, De Raedt, Thomas, Heath, Allison, Felmeister, Alex, Raman, Pichai, Nazarian, Javad, Santi, Mariarita, Storm, Phillip, Resnick, Adam, Waanders, Angela, Cole, Kristina
Published in Neuro-oncology (Charlottesville, Va.) (11.11.2019)
Published in Neuro-oncology (Charlottesville, Va.) (11.11.2019)
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Journal Article
TMOD-20. THE PEDIATRIC BRAIN TUMOR ATLAS: AN INITIATIVE BY THE CHILDREN’S BRAIN TUMOR TISSUE CONSORTIUM AND PACIFIC PEDIATRIC NEUROONCOLOGY CONSORTIUM
Zhu, Yuankun, Guo, Yiran, Heath, Allison, Raman, Pichai, Appert, Elizabeth, Mason, Jennifer, Zhang, Bo, Kalletla, Karthik, Brown, Miguel, Singh, Natasha, Farrow, Bailey, Felmeister, Alex, Killada, Parimala, Kim, Meen Chul, Lilly, Jena, Koptyra, Mateusz, Lulla, Rishi, Mueller, Sabine, Prados, Michael, Resnick, Adam, Nazarian, Javad, Storm, Phillip, Waanders, Angela
Published in Neuro-oncology (Charlottesville, Va.) (23.04.2019)
Published in Neuro-oncology (Charlottesville, Va.) (23.04.2019)
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Journal Article
GENE-15. CAVATICA- A PEDIATRIC GENOMIC CLOUD EMPOWERING DATA DISCOVERY THROUGH THE PEDIATRIC BRAIN TUMOR ATLAS
Raman, Pichai, Waanders, Angela J, Storm, Phillip B, Lilly, Jena V, Mason, Jennifer, Heath, Allison P, Felmeister, Alex S, Cros, Anthony, Zhu, Yuankun, Sender, Leonard, Prados, Michael, Mueller, Sabine, Lulla, Rishi, Nazarian, Javad, Resnick, Adam C
Published in Neuro-oncology (Charlottesville, Va.) (01.06.2017)
Published in Neuro-oncology (Charlottesville, Va.) (01.06.2017)
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Journal Article
DIPG-51. BLACKFYNN: A SECURE, CLOUD-BASED PLATFORM FOR SHARING AND ANALYZING RESEARCH READY DATA FOR PEDIATRIC CNS CANCERS
Johnson, Courtney, Christini, Amanda, Felmeister, Alex, Baglieri, Chris, Kambhampati, Madhuri, Waanders, Angela, Mason, Jennifer, Packer, Roger, Resnick, Adam, Nazarian, Javad
Published in Neuro-oncology (Charlottesville, Va.) (22.06.2018)
Published in Neuro-oncology (Charlottesville, Va.) (22.06.2018)
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Journal Article
A Framework for Analysis, Ontological Evaluation, and Visualization in Preparation to Predictive Analytics in Pediatric Brain Tumor Research
Felmeister, Alex S., Waanders, Angela J., Mason, Jennifer L., Stevens, Jeff, Bailey, L. Charles, Ganesan, Shiva, Helbig, Ingo
Published in 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (16.12.2020)
Published in 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (16.12.2020)
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Conference Proceeding
Preliminary exploratory data analysis of simulated national clinical data research network for future use in annotation of a rare tumor biobanking initiative
Felmeister, Alex S., Waanders, Angela J., Leary, Sarah E. S., Stevens, Jeff, Mason, Jennifer L., Teneralli, Rachel, Xiaohua Hu, Bailey, L. Charles
Published in 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2017)
Published in 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2017)
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Conference Proceeding
Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia
Chen, Changya, Yu, Wenbao, Alikarami, Fatemeh, Qiu, Qi, Chia-Hui, Chen, Flournoy, Jennifer, Gao, Peng, Uzun, Yasin, Li, Fang, Hu, Yuxuan, Zhu, Qin, Wang, Kai, Libbrecht, Clara, Felmeister, Alex, Rozich, Isaiah, Yang-Yang, Ding, Hunger, Stephen P, Wu, Hao, Brown, Patrick A, Guest, Erin M, Barrett, David M, Bernt, Kathrin M, Tan, Kai
Published in bioRxiv (07.12.2020)
Published in bioRxiv (07.12.2020)
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Paper