3D structures of individual mammalian genomes studied by single-cell Hi-C
Stevens, Tim J., Lando, David, Basu, Srinjan, Atkinson, Liam P., Cao, Yang, Lee, Steven F., Leeb, Martin, Wohlfahrt, Kai J., Boucher, Wayne, O’Shaughnessy-Kirwan, Aoife, Cramard, Julie, Faure, Andre J., Ralser, Meryem, Blanco, Enrique, Morey, Lluis, Sansó, Miriam, Palayret, Matthieu G. S., Lehner, Ben, Di Croce, Luciano, Wutz, Anton, Hendrich, Brian, Klenerman, Dave, Laue, Ernest D.
Published in Nature (London) (06.04.2017)
Published in Nature (London) (06.04.2017)
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Journal Article
The mutational landscape of a prion-like domain
Bolognesi, Benedetta, Faure, Andre J., Seuma, Mireia, Schmiedel, Jörn M., Tartaglia, Gian Gaetano, Lehner, Ben
Published in Nature communications (13.09.2019)
Published in Nature communications (13.09.2019)
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Journal Article
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Seitan, Vlad C, Faure, Andre J, Zhan, Ye, McCord, Rachel Patton, Lajoie, Bryan R, Ing-Simmons, Elizabeth, Lenhard, Boris, Giorgetti, Luca, Heard, Edith, Fisher, Amanda G, Flicek, Paul, Dekker, Job, Merkenschlager, Matthias
Published in Genome research (01.12.2013)
Published in Genome research (01.12.2013)
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Journal Article
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
Ing-Simmons, Elizabeth, Seitan, Vlad C, Faure, Andre J, Flicek, Paul, Carroll, Thomas, Dekker, Job, Fisher, Amanda G, Lenhard, Boris, Merkenschlager, Matthias
Published in Genome research (01.04.2015)
Published in Genome research (01.04.2015)
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Journal Article
The genetic landscape for amyloid beta fibril nucleation accurately discriminates familial Alzheimer's disease mutations
Seuma, Mireia, Faure, Andre J, Badia, Marta, Lehner, Ben, Bolognesi, Benedetta
Published in eLife (01.02.2021)
Published in eLife (01.02.2021)
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Journal Article
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
Faure, Andre J, Schmidt, Dominic, Watt, Stephen, Schwalie, Petra C, Wilson, Michael D, Xu, Huiling, Ramsay, Robert G, Odom, Duncan T, Flicek, Paul
Published in Genome research (01.11.2012)
Published in Genome research (01.11.2012)
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Journal Article
Fitness landscape of a dynamic RNA structure
Soo, Valerie W C, Swadling, Jacob B, Faure, Andre J, Warnecke, Tobias
Published in PLoS genetics (01.02.2021)
Published in PLoS genetics (01.02.2021)
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Journal Article
Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes
Schwalie, Petra C, Ward, Michelle C, Cain, Carolyn E, Faure, Andre J, Gilad, Yoav, Odom, Duncan T, Flicek, Paul
Published in Genome biology (31.12.2013)
Published in Genome biology (31.12.2013)
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Journal Article
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
Ballester, Benoit, Medina-Rivera, Alejandra, Schmidt, Dominic, Gonzàlez-Porta, Mar, Carlucci, Matthew, Chen, Xiaoting, Chessman, Kyle, Faure, Andre J, Funnell, Alister P W, Goncalves, Angela, Kutter, Claudia, Lukk, Margus, Menon, Suraj, McLaren, William M, Stefflova, Klara, Watt, Stephen, Weirauch, Matthew T, Crossley, Merlin, Marioni, John C, Odom, Duncan T, Flicek, Paul, Wilson, Michael D
Published in eLife (03.10.2014)
Published in eLife (03.10.2014)
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Journal Article
Mapping the energetic and allosteric landscapes of protein binding domains
Faure, Andre J., Domingo, Júlia, Schmiedel, Jörn M., Hidalgo-Carcedo, Cristina, Diss, Guillaume, Lehner, Ben
Published in Nature (London) (07.04.2022)
Published in Nature (London) (07.04.2022)
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Journal Article
The energetic and allosteric landscape for KRAS inhibition
Weng, Chenchun, Faure, Andre J., Escobedo, Albert, Lehner, Ben
Published in Nature (London) (15.02.2024)
Published in Nature (London) (15.02.2024)
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Journal Article
The genetic architecture of protein stability
Faure, Andre J, Martí-Aranda, Aina, Hidalgo-Carcedo, Cristina, Beltran, Antoni, Schmiedel, Jörn M, Lehner, Ben
Published in Nature (London) (25.09.2024)
Published in Nature (London) (25.09.2024)
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Journal Article
The genetic architecture of protein interaction affinity and specificity
Bendel, Alexandra M., Faure, Andre J., Klein, Dominique, Shimada, Kenji, Lyautey, Romane, Schiffelholz, Nicole, Kempf, Georg, Cavadini, Simone, Lehner, Ben, Diss, Guillaume
Published in Nature communications (14.10.2024)
Published in Nature communications (14.10.2024)
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Journal Article
An extension of the Walsh-Hadamard transform to calculate and model epistasis in genetic landscapes of arbitrary shape and complexity
Faure, Andre J, Lehner, Ben, Miró Pina, Verónica, Serrano Colome, Claudia, Weghorn, Donate
Published in PLoS computational biology (28.05.2024)
Published in PLoS computational biology (28.05.2024)
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Journal Article
Energetic portrait of the amyloid beta nucleation transition state
Arutyunyan, Anna, Seuma, Mireia, Faure, Andre J, Bolognesi, Benedetta, Lehner, Ben
Published in bioRxiv (24.07.2024)
Published in bioRxiv (24.07.2024)
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Journal Article
3D structure of individual mammalian genomes studied by single cell Hi-C
Stevens, Tim J., Lando, David, Basu, Srinjan, Atkinson, Liam P., Cao, Yang, Lee, Steven F., Leeb, Martin, Wohlfahrt, Kai J., Boucher, Wayne, O’Shaughnessy-Kirwan, Aoife, Cramard, Julie, Faure, Andre J., Ralser, Meryem, Blanco, Enrique, Morey, Lluis, Sansó, Miriam, Palayret, Matthieu G. S., Lehner, Ben, Di Croce, Luciano, Wutz, Anton, Hendrich, Brian, Klenerman, Dave, Laue, Ernest D.
Published in Nature (London) (13.03.2017)
Published in Nature (London) (13.03.2017)
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Journal Article