Search Results - "Faraggi, Eshel" :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

DescribePROT: database of amino acid-level protein structure and function predictions

DescribePROT: database of amino acid-level protein structure and function predictions

by Zhao, Bi, Katuwawala, Akila, Oldfield, Christopher J, Dunker, A Keith, Faraggi, Eshel, Gsponer, Jörg, Kloczkowski, Andrzej, Malhis, Nawar, Mirdita, Milot, Obradovic, Zoran, Söding, Johannes, Steinegger, Martin, Zhou, Yaoqi, Kurgan, Lukasz
Published in Nucleic acids research (08.01.2021)

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Journal Article

BEST: improved prediction of B-cell epitopes from antigen sequences

BEST: improved prediction of B-cell epitopes from antigen sequences

by Gao, Jianzhao, Faraggi, Eshel, Zhou, Yaoqi, Ruan, Jishou, Kurgan, Lukasz
Published in PloS one (27.06.2012)

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Journal Article

Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

by Faraggi, Eshel, Yang, Yuedong, Zhang, Shesheng, Zhou, Yaoqi
Published in Structure (London) (11.11.2009)

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Journal Article

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

by Faraggi, Eshel, Xue, Bin, Zhou, Yaoqi
Published in Proteins, structure, function, and bioinformatics (01.03.2009)

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Journal Article

Rapid discrimination between deleterious and benign missense mutations in the CAGI 6 experiment

Rapid discrimination between deleterious and benign missense mutations in the CAGI 6 experiment

by Faraggi, Eshel, Jernigan, Robert L, Kloczkowski, Andrzej
Published in Human genomics (27.08.2024)

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Journal Article

Intrinsic Disorder and Semi-disorder Prediction by SPINE-D

Intrinsic Disorder and Semi-disorder Prediction by SPINE-D

by Zhang, Tuo, Faraggi, Eshel, Li, Zhixiu, Zhou, Yaoqi
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2017)

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Journal Article

SPINE-D: Accurate Prediction of Short and Long Disordered Regions by a Single Neural-Network Based Method

SPINE-D: Accurate Prediction of Short and Long Disordered Regions by a Single Neural-Network Based Method

by Zhang, Tuo, Faraggi, Eshel, Xue, Bin, Dunker, A. Keith, Uversky, Vladimir N., Zhou, Yaoqi
Published in Journal of biomolecular structure & dynamics (01.02.2012)

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Journal Article

Real-value prediction of backbone torsion angles

Real-value prediction of backbone torsion angles

by Xue, Bin, Dor, Ofer, Faraggi, Eshel, Zhou, Yaoqi
Published in Proteins, structure, function, and bioinformatics (01.07.2008)

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Journal Article

Prediction of Deleterious Single Amino Acid Polymorphisms with a Consensus Holdout Sampler

Prediction of Deleterious Single Amino Acid Polymorphisms with a Consensus Holdout Sampler

by Álvarez-Machancoses, Óscar, Faraggi, Eshel, deAndrés-Galiana, Enrique J., Fernández-Martínez, Juan L., Kloczkowski, Andrzej
Published in Current genomics (01.01.2024)

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Journal Article

Protein Structure

Protein Structure

by Eshel Faraggi
Year of Publication 2012

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eBook

Entropy, Fluctuations, and Disordered Proteins

Entropy, Fluctuations, and Disordered Proteins

by Faraggi, Eshel, Dunker, A Keith, Jernigan, Robert L, Kloczkowski, Andrzej
Published in Entropy (Basel, Switzerland) (01.08.2019)

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Journal Article

Reoptimized UNRES Potential for Protein Model Quality Assessment

Reoptimized UNRES Potential for Protein Model Quality Assessment

by Faraggi, Eshel, Krupa, Pawel, Mozolewska, Magdalena A, Liwo, Adam, Kloczkowski, Andrzej
Published in Genes (03.12.2018)

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Journal Article

Computational Ways to Enhance Protein Inhibitor Design

Computational Ways to Enhance Protein Inhibitor Design

by Jernigan, Robert L, Sankar, Kannan, Jia, Kejue, Faraggi, Eshel, Kloczkowski, Andrzej
Published in Frontiers in molecular biosciences (03.02.2021)

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Journal Article

Biophysical effects of pulsed lasers in the retina and other tissues containing strongly absorbing particles: shockwave and explosive bubble generation

Biophysical effects of pulsed lasers in the retina and other tissues containing strongly absorbing particles: shockwave and explosive bubble generation

by Faraggi, Eshel, Gerstman, Bernard S, Sun, Jinming
Published in Journal of biomedical optics (01.11.2005)

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Journal Article

A global machine learning based scoring function for protein structure prediction

A global machine learning based scoring function for protein structure prediction

by Faraggi, Eshel, Kloczkowski, Andrzej
Published in Proteins, structure, function, and bioinformatics (01.05.2014)

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Journal Article

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

by Faraggi, Eshel, Zhang, Tuo, Yang, Yuedong, Kurgan, Lukasz, Zhou, Yaoqi
Published in Journal of computational chemistry (30.01.2012)

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Journal Article

Accurate single-sequence prediction of solvent accessible surface area using local and global features

Accurate single-sequence prediction of solvent accessible surface area using local and global features

by Faraggi, Eshel, Zhou, Yaoqi, Kloczkowski, Andrzej
Published in Proteins, structure, function, and bioinformatics (01.11.2014)

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Journal Article

Accurate Prediction of One-Dimensional Protein Structure Features Using SPINE-X

Accurate Prediction of One-Dimensional Protein Structure Features Using SPINE-X

by Faraggi, Eshel, Kloczkowski, Andrzej
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2017)

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Journal Article

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

by Yang, Yuedong, Faraggi, Eshel, Zhao, Huiying, Zhou, Yaoqi
Published in Bioinformatics (01.08.2011)

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Journal Article

Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles

Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles

by Li, Zhixiu, Yang, Yuedong, Faraggi, Eshel, Zhan, Jian, Zhou, Yaoqi
Published in Proteins, structure, function, and bioinformatics (01.10.2014)

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