High-resolution phylogenetic microbial community profiling
Singer, Esther, Bushnell, Brian, Coleman-Derr, Devin, Bowman, Brett, Bowers, Robert M, Levy, Asaf, Gies, Esther A, Cheng, Jan-Fang, Copeland, Alex, Klenk, Hans-Peter, Hallam, Steven J, Hugenholtz, Philip, Tringe, Susannah G, Woyke, Tanja
Published in The ISME Journal (01.08.2016)
Published in The ISME Journal (01.08.2016)
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Decontamination of MDA reagents for single cell whole genome amplification
Woyke, Tanja, Sczyrba, Alexander, Lee, Janey, Rinke, Christian, Tighe, Damon, Clingenpeel, Scott, Malmstrom, Rex, Stepanauskas, Ramunas, Cheng, Jan-Fang
Published in PloS one (20.10.2011)
Published in PloS one (20.10.2011)
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Journal Article
Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes
Huang, Jing, Yu, Zheng, Groom, Joseph, Cheng, Jan-Fang, Tarver, Angela, Yoshikuni, Yasuo, Chistoserdova, Ludmila
Published in The ISME Journal (01.08.2019)
Published in The ISME Journal (01.08.2019)
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Journal Article
Insights into the phylogeny and coding potential of microbial dark matter
Rinke, Christian, Schwientek, Patrick, Sczyrba, Alexander, Ivanova, Natalia N, Anderson, Iain J, Cheng, Jan-Fang, Darling, Aaron, Malfatti, Stephanie, Swan, Brandon K, Gies, Esther A, Dodsworth, Jeremy A, Hedlund, Brian P, Tsiamis, George, Sievert, Stefan M, Liu, Wen-Tso, Eisen, Jonathan A, Hallam, Steven J, Kyrpides, Nikos C, Stepanauskas, Ramunas, Rubin, Edward M, Hugenholtz, Philip, Woyke, Tanja
Published in Nature (London) (25.07.2013)
Published in Nature (London) (25.07.2013)
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Journal Article
Assembling the marine metagenome, one cell at a time
Woyke, Tanja, Xie, Gary, Copeland, Alex, González, José M, Han, Cliff, Kiss, Hajnalka, Saw, Jimmy H, Senin, Pavel, Yang, Chi, Chatterji, Sourav, Cheng, Jan-Fang, Eisen, Jonathan A, Sieracki, Michael E, Stepanauskas, Ramunas
Published in PloS one (23.04.2009)
Published in PloS one (23.04.2009)
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Journal Article
Intracellular pathways for lignin catabolism in white-rot fungi
Del Cerro, Carlos, Erickson, Erika, Dong, Tao, Wong, Allison R, Eder, Elizabeth K, Purvine, Samuel O, Mitchell, Hugh D, Weitz, Karl K, Markillie, Lye Meng, Burnet, Meagan C, Hoyt, David W, Chu, Rosalie K, Cheng, Jan-Fang, Ramirez, Kelsey J, Katahira, Rui, Xiong, Wei, Himmel, Michael E, Subramanian, Venkataramanan, Linger, Jeffrey G, Salvachúa, Davinia
Published in Proceedings of the National Academy of Sciences - PNAS (02.03.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (02.03.2021)
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Journal Article
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes
Roux, Simon, Krupovic, Mart, Daly, Rebecca A, Borges, Adair L, Nayfach, Stephen, Schulz, Frederik, Sharrar, Allison, Matheus Carnevali, Paula B, Cheng, Jan-Fang, Ivanova, Natalia N, Bondy-Denomy, Joseph, Wrighton, Kelly C, Woyke, Tanja, Visel, Axel, Kyrpides, Nikos C, Eloe-Fadrosh, Emiley A
Published in Nature microbiology (01.11.2019)
Published in Nature microbiology (01.11.2019)
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Journal Article
One bacterial cell, one complete genome
Woyke, Tanja, Tighe, Damon, Mavromatis, Konstantinos, Clum, Alicia, Copeland, Alex, Schackwitz, Wendy, Lapidus, Alla, Wu, Dongying, McCutcheon, John P, McDonald, Bradon R, Moran, Nancy A, Bristow, James, Cheng, Jan-Fang
Published in PloS one (23.04.2010)
Published in PloS one (23.04.2010)
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Journal Article
Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
Bowers, Robert M, Clum, Alicia, Tice, Hope, Lim, Joanne, Singh, Kanwar, Ciobanu, Doina, Ngan, Chew Yee, Cheng, Jan-Fang, Tringe, Susannah G, Woyke, Tanja
Published in BMC genomics (24.10.2015)
Published in BMC genomics (24.10.2015)
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Journal Article
Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems
Liu, Hualan, Robinson, David S, Wu, Zong-Yen, Kuo, Rita, Yoshikuni, Yasuo, Blaby, Ian K, Cheng, Jan-Fang
Published in PloS one (04.11.2020)
Published in PloS one (04.11.2020)
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Journal Article
Constructing a yeast to express the largest cellulosome complex on the cell surface
Anandharaj, Marimuthu, Lin, Yu-Ju, Rani, Rizwana Parveen, Nadendla, Eswar Kumar, Ho, Meng-Chiao, Huang, Chieh-Chen, Cheng, Jan-Fang, Chang, Jui-Jen, Li, Wen-Hsiung
Published in Proceedings of the National Academy of Sciences - PNAS (04.02.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (04.02.2020)
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Journal Article
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Eisen, Jonathan A, Wu, Dongying, Hugenholtz, Philip, Mavromatis, Konstantinos, Pukall, Rüdiger, Dalin, Eileen, Ivanova, Natalia N, Kunin, Victor, Goodwin, Lynne, Wu, Martin, Tindall, Brian J, Hooper, Sean D, Pati, Amrita, Lykidis, Athanasios, Spring, Stefan, Anderson, Iain J, D'haeseleer, Patrik, Zemla, Adam, Singer, Mitchell, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Han, Cliff, Chen, Feng, Cheng, Jan-Fang, Lucas, Susan, Kerfeld, Cheryl, Lang, Elke, Gronow, Sabine, Chain, Patrick, Bruce, David, Rubin, Edward M, Kyrpides, Nikos C, Klenk, Hans-Peter
Published in Nature (London) (24.12.2009)
Published in Nature (London) (24.12.2009)
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Journal Article
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
Kohwi-Shigematsu, Terumi, Horike, Shin-ichi, Cai, Shutao, Miyano, Masaru, Cheng, Jan-Fang
Published in Nature genetics (01.01.2005)
Published in Nature genetics (01.01.2005)
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Journal Article
CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria
Ke, Jing, Robinson, David, Wu, Zong-Yen, Kuftin, Andrea, Louie, Katherine, Kosina, Suzanne, Northen, Trent, Cheng, Jan-Fang, Yoshikuni, Yasuo
Published in Cell chemical biology (21.04.2022)
Published in Cell chemical biology (21.04.2022)
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Journal Article
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
Sevim, Volkan, Lee, Juna, Egan, Robert, Clum, Alicia, Hundley, Hope, Lee, Janey, Everroad, R Craig, Detweiler, Angela M, Bebout, Brad M, Pett-Ridge, Jennifer, Göker, Markus, Murray, Alison E, Lindemann, Stephen R, Klenk, Hans-Peter, O'Malley, Ronan, Zane, Matthew, Cheng, Jan-Fang, Copeland, Alex, Daum, Christopher, Singer, Esther, Woyke, Tanja
Published in Scientific data (26.11.2019)
Published in Scientific data (26.11.2019)
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Journal Article
Dicer, Drosha, and Outcomes in Patients with Ovarian Cancer
Merritt, William M, Lin, Yvonne G, Han, Liz Y, Kamat, Aparna A, Spannuth, Whitney A, Schmandt, Rosemarie, Urbauer, Diana, Pennacchio, Len A, Cheng, Jan-Fang, Nick, Alpa M, Deavers, Michael T, Mourad-Zeidan, Alexandra, Wang, Hua, Mueller, Peter, Lenburg, Marc E, Gray, Joe W, Mok, Samuel, Birrer, Michael J, Lopez-Berestein, Gabriel, Coleman, Robert L, Bar-Eli, Menashe, Sood, Anil K
Published in The New England journal of medicine (18.12.2008)
Published in The New England journal of medicine (18.12.2008)
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Journal Article
Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
Oberortner, Ernst, Cheng, Jan-Fang, Hillson, Nathan J, Deutsch, Samuel
Published in ACS synthetic biology (17.03.2017)
Published in ACS synthetic biology (17.03.2017)
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Journal Article
Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach
Bowman, Emily K., Deaner, Matthew, Cheng, Jan-Fang, Evans, Robert, Oberortner, Ernst, Yoshikuni, Yasuo, Alper, Hal S.
Published in Proceedings of the National Academy of Sciences - PNAS (04.08.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (04.08.2020)
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Journal Article
Leveraging single-cell genomics to expand the fungal tree of life
Ahrendt, Steven R, Quandt, C Alisha, Ciobanu, Doina, Clum, Alicia, Salamov, Asaf, Andreopoulos, Bill, Cheng, Jan-Fang, Woyke, Tanja, Pelin, Adrian, Henrissat, Bernard, Reynolds, Nicole K, Benny, Gerald L, Smith, Matthew E, James, Timothy Y, Grigoriev, Igor V
Published in Nature microbiology (01.12.2018)
Published in Nature microbiology (01.12.2018)
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