VoPo leverages cellular heterogeneity for predictive modeling of single-cell data
Stanley, Natalie, Stelzer, Ina A, Tsai, Amy S, Fallahzadeh, Ramin, Ganio, Edward, Becker, Martin, Phongpreecha, Thanaphong, Nassar, Huda, Ghaemi, Sajjad, Maric, Ivana, Culos, Anthony, Chang, Alan L, Xenochristou, Maria, Han, Xiaoyuan, Espinosa, Camilo, Rumer, Kristen, Peterson, Laura, Verdonk, Franck, Gaudilliere, Dyani, Tsai, Eileen, Feyaerts, Dorien, Einhaus, Jakob, Ando, Kazuo, Wong, Ronald J, Obermoser, Gerlinde, Shaw, Gary M, Stevenson, David K, Angst, Martin S, Gaudilliere, Brice, Aghaeepour, Nima
Published in Nature communications (27.07.2020)
Published in Nature communications (27.07.2020)
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Journal Article
Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma
Ganio, Edward A, Stanley, Natalie, Lindberg-Larsen, Viktoria, Einhaus, Jakob, Tsai, Amy S, Verdonk, Franck, Culos, Anthony, Ghaemi, Sajjad, Rumer, Kristen K, Stelzer, Ina A, Gaudilliere, Dyani, Tsai, Eileen, Fallahzadeh, Ramin, Choisy, Benjamin, Kehlet, Henrik, Aghaeepour, Nima, Angst, Martin S, Gaudilliere, Brice
Published in Nature communications (27.07.2020)
Published in Nature communications (27.07.2020)
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Journal Article
Author Correction: Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma
Ganio, Edward A., Stanley, Natalie, Lindberg-Larsen, Viktoria, Einhaus, Jakob, Tsai, Amy S., Verdonk, Franck, Culos, Anthony, Ghaemi, Sajjad, Rumer, Kristen K., Stelzer, Ina A., Gaudilliere, Dyani, Tsai, Eileen, Fallahzadeh, Ramin, Choisy, Benjamin, Kehlet, Henrik, Aghaeepour, Nima, Angst, Martin S., Gaudilliere, Brice
Published in Nature communications (03.09.2020)
Published in Nature communications (03.09.2020)
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Journal Article
Differential Dynamics of the Maternal Immune System in Healthy Pregnancy and Preeclampsia
Han, Xiaoyuan, Ghaemi, Mohammad S, Ando, Kazuo, Peterson, Laura S, Ganio, Edward A, Tsai, Amy S, Gaudilliere, Dyani K, Stelzer, Ina A, Einhaus, Jakob, Bertrand, Basile, Stanley, Natalie, Culos, Anthony, Tanada, Athena, Hedou, Julien, Tsai, Eileen S, Fallahzadeh, Ramin, Wong, Ronald J, Judy, Amy E, Winn, Virginia D, Druzin, Maurice L, Blumenfeld, Yair J, Hlatky, Mark A, Quaintance, Cecele C, Gibbs, Ronald S, Carvalho, Brendan, Shaw, Gary M, Stevenson, David K, Angst, Martin S, Aghaeepour, Nima, Gaudilliere, Brice
Published in Frontiers in immunology (11.06.2019)
Published in Frontiers in immunology (11.06.2019)
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Journal Article
Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions
Culos, Anthony, Tsai, Amy S, Stanley, Natalie, Becker, Martin, Ghaemi, Mohammad S, McIlwain, David R, Fallahzadeh, Ramin, Tanada, Athena, Nassar, Huda, Espinosa, Camilo, Xenochristou, Maria, Ganio, Edward, Peterson, Laura, Han, Xiaoyuan, Stelzer, Ina A, Ando, Kazuo, Gaudilliere, Dyani, Phongpreecha, Thanaphong, Marić, Ivana, Chang, Alan L, Shaw, Gary M, Stevenson, David K, Bendall, Sean, Davis, Kara L, Fantl, Wendy, Nolan, Garry P, Hastie, Trevor, Tibshirani, Robert, Angst, Martin S, Gaudilliere, Brice, Aghaeepour, Nima
Published in Nature machine intelligence (01.10.2020)
Published in Nature machine intelligence (01.10.2020)
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Journal Article
Simulation-based protein engineering of R. erythropolis FMN oxidoreductase (DszD)
Fallahzadeh, Ramin, Bambai, Bijan, Esfahani, Kasra, Sepahi, Abbas Akhavan
Published in Heliyon (01.08.2019)
Published in Heliyon (01.08.2019)
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Journal Article
Increasing the catalytic power of the flavin reductase DszD enzyme using site-directed mutagenesis method in Rhodococcus erythropolis
Fallahzadeh, Ramin, Esfahani, Kasra, Akhavan Sepahi, Abbas, Kamali, Nasrin, Bambai, Bijan
Published in Majallah-i dānishgāh-i 'ulūm-i pizishkī-i Arāk (30.12.2019)
Published in Majallah-i dānishgāh-i 'ulūm-i pizishkī-i Arāk (30.12.2019)
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Journal Article
A data-driven health index for neonatal morbidities
De Francesco, Davide, Blumenfeld, Yair J., Marić, Ivana, Mayo, Jonathan A., Chang, Alan L., Fallahzadeh, Ramin, Phongpreecha, Thanaphong, Butwick, Alex J., Xenochristou, Maria, Phibbs, Ciaran S., Bidoki, Neda H., Becker, Martin, Culos, Anthony, Espinosa, Camilo, Liu, Qun, Sylvester, Karl G., Gaudilliere, Brice, Angst, Martin S., Stevenson, David K., Shaw, Gary M., Aghaeepour, Nima
Published in iScience (15.04.2022)
Published in iScience (15.04.2022)
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Journal Article
A Reliable and Reconfigurable Signal Processing Framework for Estimation of Metabolic Equivalent of Task in Wearable Sensors
Alinia, Parastoo, Saeedi, Ramyar, Fallahzadeh, Ramin, Rokni, Ali, Ghasemzadeh, Hassan
Published in IEEE journal of selected topics in signal processing (01.08.2016)
Published in IEEE journal of selected topics in signal processing (01.08.2016)
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Journal Article
Electronic Assessment of Physical Decline in Geriatric Cancer Patients
Fallahzadeh, Ramin, Ghasemzadeh, Hassan, Shahrokni, Armin
Published in Current oncology reports (01.03.2018)
Published in Current oncology reports (01.03.2018)
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Journal Article
Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset
Stelzer, Ina A, Ghaemi, Mohammad S, Han, Xiaoyuan, Ando, Kazuo, Hédou, Julien J, Feyaerts, Dorien, Peterson, Laura S, Rumer, Kristen K, Tsai, Eileen S, Ganio, Edward A, Gaudillière, Dyani K, Tsai, Amy S, Choisy, Benjamin, Gaigne, Lea P, Verdonk, Franck, Jacobsen, Danielle, Gavasso, Sonia, Traber, Gavin M, Ellenberger, Mathew, Stanley, Natalie, Becker, Martin, Culos, Anthony, Fallahzadeh, Ramin, Wong, Ronald J, Darmstadt, Gary L, Druzin, Maurice L, Winn, Virginia D, Gibbs, Ronald S, Ling, Xuefeng B, Sylvester, Karl, Carvalho, Brendan, Snyder, Michael P, Shaw, Gary M, Stevenson, David K, Contrepois, Kévin, Angst, Martin S, Aghaeepour, Nima, Gaudillière, Brice
Published in Science translational medicine (05.05.2021)
Published in Science translational medicine (05.05.2021)
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Journal Article
A year-long immune profile of the systemic response in acute stroke survivors
Tsai, Amy S, Berry, Kacey, Beneyto, Maxime M, Gaudilliere, Dyani, Ganio, Edward A, Culos, Anthony, Ghaemi, Mohammad S, Choisy, Benjamin, Djebali, Karim, Einhaus, Jakob F, Bertrand, Basile, Tanada, Athena, Stanley, Natalie, Fallahzadeh, Ramin, Baca, Quentin, Quach, Lisa N, Osborn, Elizabeth, Drag, Lauren, Lansberg, Maarten G, Angst, Martin S, Gaudilliere, Brice, Buckwalter, Marion S, Aghaeepour, Nima
Published in Brain (London, England : 1878) (01.04.2019)
Published in Brain (London, England : 1878) (01.04.2019)
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Journal Article
Objective Activity Parameters Track Patient-specific Physical Recovery Trajectories After Surgery and Link With Individual Preoperative Immune States
Fallahzadeh, Ramin, Verdonk, Franck, Ganio, Ed, Culos, Anthony, Stanley, Natalie, Maric, Ivana, Chang, Alan L, Becker, Martin, Phongpreecha, Thanaphong, Xenochristou, Maria, De Francesco, Davide, Espinosa, Camilo, Gao, Xiaoxiao, Tsai, Amy, Sultan, Pervez, Tingle, Martha, Amanatullah, Derek F, Huddleston, James I, Goodman, Stuart B, Gaudilliere, Brice, Angst, Martin S, Aghaeepour, Nima
Published in Annals of surgery (01.03.2023)
Published in Annals of surgery (01.03.2023)
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Journal Article
Integrated Single-cell and Plasma Proteomic Modeling to Predict Surgical Site Complications: A Prospective Cohort Study
Rumer, Kristen K, Hedou, Julien, Tsai, Amy, Einhaus, Jakob, Verdonk, Franck, Stanley, Natalie, Choisy, Benjamin, Ganio, Edward, Bonham, Adam, Jacobsen, Danielle, Warrington, Beata, Gao, Xiaoxiao, Tingle, Martha, McAllister, Tiffany N, Fallahzadeh, Ramin, Feyaerts, Dorien, Stelzer, Ina, Gaudilliere, Dyani, Ando, Kazuo, Shelton, Andrew, Morris, Arden, Kebebew, Electron, Aghaeepour, Nima, Kin, Cindy, Angst, Martin S, Gaudilliere, Brice
Published in Annals of surgery (01.03.2022)
Published in Annals of surgery (01.03.2022)
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Journal Article
A machine learning approach for medication adherence monitoring using body-worn sensors
Hezarjaribi, Niloofar, Fallahzadeh, Ramin, Ghasemzadeh, Hassan
Published in 2016 Design, Automation & Test in Europe Conference & Exhibition (DATE) (01.03.2016)
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Published in 2016 Design, Automation & Test in Europe Conference & Exhibition (DATE) (01.03.2016)
Conference Proceeding
Journal Article
In‐silico generation of high‐dimensional immune response data in patients using a deep neural network
Fallahzadeh, Ramin, Bidoki, Neda H., Stelzer, Ina A., Becker, Martin, Marić, Ivana, Chang, Alan L., Culos, Anthony, Phongpreecha, Thanaphong, Xenochristou, Maria, De Francesco, Davide, Espinosa, Camilo, Berson, Eloise, Verdonk, Franck, Angst, Martin S., Gaudilliere, Brice, Aghaeepour, Nima
Published in Cytometry. Part A (01.05.2023)
Published in Cytometry. Part A (01.05.2023)
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Journal Article