Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling
Yuan, Yinyin, Failmezger, Henrik, Rueda, Oscar M, Ali, H Raza, Gräf, Stefan, Chin, Suet-Feung, Schwarz, Roland F, Curtis, Christina, Dunning, Mark J, Bardwell, Helen, Johnson, Nicola, Doyle, Sarah, Turashvili, Gulisa, Provenzano, Elena, Aparicio, Sam, Caldas, Carlos, Markowetz, Florian
Published in Science translational medicine (24.10.2012)
Published in Science translational medicine (24.10.2012)
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Journal Article
Superpixel-Based Conditional Random Fields (SuperCRF): Incorporating Global and Local Context for Enhanced Deep Learning in Melanoma Histopathology
Zormpas-Petridis, Konstantinos, Failmezger, Henrik, Raza, Shan E Ahmed, Roxanis, Ioannis, Jamin, Yann, Yuan, Yinyin
Published in Frontiers in oncology (11.10.2019)
Published in Frontiers in oncology (11.10.2019)
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Journal Article
Analysis of Spatial Organization of Suppressive Myeloid Cells and Effector T Cells in Colorectal Cancer-A Potential Tool for Discovering Prognostic Biomarkers in Clinical Research
Zwing, Natalie, Failmezger, Henrik, Ooi, Chia-Huey, Hibar, Derrek P, Cañamero, Marta, Gomes, Bruno, Gaire, Fabien, Korski, Konstanty
Published in Frontiers in immunology (29.10.2020)
Published in Frontiers in immunology (29.10.2020)
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Journal Article
Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors
Dursun, Ezgi, Endele, Max, Musumeci, Andrea, Failmezger, Henrik, Wang, Shu-Hung, Tresch, Achim, Schroeder, Timm, Krug, Anne B.
Published in Scientific reports (28.11.2016)
Published in Scientific reports (28.11.2016)
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Journal Article
MowJoe: a method for automated-high throughput dissected leaf phenotyping
Failmezger, Henrik, Lempe, Janne, Khadem, Nasim, Cartolano, Maria, Tsiantis, Miltos, Tresch, Achim
Published in Plant methods (26.03.2018)
Published in Plant methods (26.03.2018)
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Journal Article
Topological Tumor Graphs: A Graph-Based Spatial Model to Infer Stromal Recruitment for Immunosuppression in Melanoma Histology
Failmezger, Henrik, Muralidhar, Sathya, Rullan, Antonio, de Andrea, Carlos E, Sahai, Erik, Yuan, Yinyin
Published in Cancer research (Chicago, Ill.) (01.03.2020)
Published in Cancer research (Chicago, Ill.) (01.03.2020)
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Journal Article
Abstract 2835: Effector T-cell shape is a potential digital biomarker for assessing CD8 lymphocyte activation in colorectal cancer (CRC) tumors
Zwing, Natalie, Li, Xiao, Hibar, Derrek, Failmezger, Henrik, Nie, Yao, Gaire, Fabien, Korski, Konstanty
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Computational pathology–based HER2 quantification to identify novel biomarkers in gastric cancer (GC)
Kapil, Ansh, Failmezger, Henrik, Spitzmüller, Andreas, Chan, Jessica, Haneder, Susanne, Shumilov, Anatoliy, Barkell, Alice, Oguma, Toshihiro, Inaki, Koichiro, Suto, Fumitaka, Allard, John, Lee, Jeeyun, Barrett, J Carl, Schmidt, Günter, Sade, Hadassah, Carroll, Danielle, Cecchi, Fabiola
Published in Journal of clinical oncology (01.02.2023)
Published in Journal of clinical oncology (01.02.2023)
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Journal Article
Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging
Failmezger, Henrik, Dursun, Ezgi, Dümcke, Sebastian, Endele, Max, Poron, Don, Schroeder, Timm, Krug, Anne, Tresch, Achim
Published in Bioinformatics (Oxford, England) (01.07.2019)
Published in Bioinformatics (Oxford, England) (01.07.2019)
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Journal Article
Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions
Niederberger, Theresa, Failmezger, Henrik, Uskat, Diana, Poron, Don, Glauche, Ingmar, Scherf, Nico, Roeder, Ingo, Schroeder, Timm, Tresch, Achim
Published in Bioinformatics (01.06.2015)
Published in Bioinformatics (01.06.2015)
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Journal Article
Learning gene network structure from time laps cell imaging in RNAi Knock downs
Failmezger, Henrik, Praveen, Paurush, Tresch, Achim, Fröhlich, Holger
Published in Bioinformatics (15.06.2013)
Published in Bioinformatics (15.06.2013)
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Journal Article
Capturing Global Spatial Context for Accurate Cell Classification in Skin Cancer Histology
Zormpas-Petridis, Konstantinos, Failmezger, Henrik, Roxanis, Ioannis, Blackledge, Matthew, Jamin, Yann, Yuan, Yinyin
Published in Computational Pathology and Ophthalmic Medical Image Analysis (2018)
Published in Computational Pathology and Ophthalmic Medical Image Analysis (2018)
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Book Chapter
Capturing global spatial context for accurate cell classification in skin cancer histology
Zormpas-Petridis, Konstantinos, Failmezger, Henrik, Roxanis, Ioannis, Blackledge, Matthew, Jamin, Yann, Yuan, Yinyin
Year of Publication 07.08.2018
Year of Publication 07.08.2018
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Journal Article