APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data
Fahmi, Naima Ahmed, Ahmed, Khandakar Tanvir, Chang, Jae-Woong, Nassereddeen, Heba, Fan, Deliang, Yong, Jeongsik, Zhang, Wei
Published in BMC bioinformatics (28.09.2022)
Published in BMC bioinformatics (28.09.2022)
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Journal Article
mTOR Contributes to the Proteome Diversity through Transcriptome-Wide Alternative Splicing
Cheng, Sze, Fahmi, Naima Ahmed, Park, Meeyeon, Sun, Jiao, Thao, Kaitlyn, Yeh, Hsin-Sung, Zhang, Wei, Yong, Jeongsik
Published in International journal of molecular sciences (17.10.2022)
Published in International journal of molecular sciences (17.10.2022)
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Journal Article
53BP1-ACLY-SLBP-coordinated activation of replication-dependent histone biogenesis maintains genomic integrity
Wu, TingTing, Jun, Semo, Choi, Eun-Ji, Sun, Jiao, Yang, Eun-Bi, Lee, Hyun-Seo, Kim, Sang-Yong, Fahmi, Naima Ahmed, Jiang, Qibing, Zhang, Wei, Yong, Jeongsik, Lee, Jung-Hee, You, Ho Jin
Published in Nucleic acids research (22.02.2022)
Published in Nucleic acids research (22.02.2022)
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Journal Article
Computational Methods to Study Human Transcript Variants in COVID-19 Infected Lung Cancer Cells
Sun, Jiao, Fahmi, Naima Ahmed, Nassereddeen, Heba, Cheng, Sze, Martinez, Irene, Fan, Deliang, Yong, Jeongsik, Zhang, Wei
Published in International journal of molecular sciences (07.09.2021)
Published in International journal of molecular sciences (07.09.2021)
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Journal Article
AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data
Fahmi, Naima Ahmed, Nassereddeen, Heba, Chang, Jaewoong, Park, Meeyeon, Yeh, Hsinsung, Sun, Jiao, Fan, Deliang, Yong, Jeongsik, Zhang, Wei
Published in International journal of molecular sciences (25.04.2021)
Published in International journal of molecular sciences (25.04.2021)
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Journal Article
PIM-Assembler: A Processing-in-Memory Platform for Genome Assembly
Angizi, Shaahin, Fahmi, Naima Ahmed, Zhang, Wei, Fan, Deliang
Published in 2020 57th ACM/IEEE Design Automation Conference (DAC) (01.07.2020)
Published in 2020 57th ACM/IEEE Design Automation Conference (DAC) (01.07.2020)
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Conference Proceeding
Investigating Chaperonin-Containing TCP-1 subunit 2 as an essential component of the chaperonin complex for tumorigenesis
Showalter, Anne E., Martini, Ana C., Nierenberg, Daniel, Hosang, Kristen, Fahmi, Naima Ahmed, Gopalan, Priya, Khaled, Amr S., Zhang, Wei, Khaled, Annette R.
Published in Scientific reports (21.01.2020)
Published in Scientific reports (21.01.2020)
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Journal Article
PIM-Quantifier: A Processing-in-Memory Platform for mRNA Quantification
Zhang, Fan, Angizi, Shaahin, Fahmi, Naima Ahmed, Zhang, Wei, Fan, Deliang
Published in 2021 58th ACM/IEEE Design Automation Conference (DAC) (05.12.2021)
Published in 2021 58th ACM/IEEE Design Automation Conference (DAC) (05.12.2021)
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Conference Proceeding
mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control
Chang, Jae-Woong, Yeh, Hsin-Sung, Park, Meeyeon, Erber, Luke, Sun, Jiao, Cheng, Sze, Bui, Alexander M, Fahmi, Naima Ahmed, Nasti, Ryan, Kuang, Rui, Chen, Yue, Zhang, Wei, Yong, Jeongsik
Published in Nucleic acids research (04.11.2019)
Published in Nucleic acids research (04.11.2019)
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Journal Article
Transcriptional programming drives Ibrutinib-resistance evolution in mantle cell lymphoma
Zhao, Xiaohong, Wang, Michelle Y., Jiang, Huijuan, Lwin, Tint, Park, Paul M., Gao, Jing, Meads, Mark B., Ren, Yuan, Li, Tao, Sun, Jiao, Fahmi, Naima Ahmed, Singh, Satishkumar, Sehgal, Lalit, Wang, Xuefeng, Silva, Ariosto S., Sotomayor, Eduardo M., Shain, Kenneth H., Cleveland, John L., Wang, Michael, Zhang, Wei, Qi, Jun, Shah, Bijal D., Tao, Jianguo
Published in Cell reports (Cambridge) (16.03.2021)
Published in Cell reports (Cambridge) (16.03.2021)
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Journal Article