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Published in Neuron (Cambridge, Mass.) (26.04.2012)
Published in Neuron (Cambridge, Mass.) (26.04.2012)
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The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma
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Published in Nature genetics (01.05.2014)
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Evolution of symbiotic bacteria in the distal human intestine
Xu, Jian, Mahowald, Michael A, Ley, Ruth E, Lozupone, Catherine A, Hamady, Micah, Martens, Eric C, Henrissat, Bernard, Coutinho, Pedro M, Minx, Patrick, Latreille, Philippe, Cordum, Holland, Van Brunt, Andrew, Kim, Kyung, Fulton, Robert S, Fulton, Lucinda A, Clifton, Sandra W, Wilson, Richard K, Knight, Robin D, Gordon, Jeffrey I
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Published in PLoS biology (01.07.2007)
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Clonal architecture of secondary acute myeloid leukemia defined by single-cell sequencing
Hughes, Andrew E O, Magrini, Vincent, Demeter, Ryan, Miller, Christopher A, Fulton, Robert, Fulton, Lucinda L, Eades, William C, Elliott, Kevin, Heath, Sharon, Westervelt, Peter, Ding, Li, Conrad, Donald F, White, Brian S, Shao, Jin, Link, Daniel C, DiPersio, John F, Mardis, Elaine R, Wilson, Richard K, Ley, Timothy J, Walter, Matthew J, Graubert, Timothy A
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Published in PLoS genetics (01.07.2014)
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C11orf95–RELA fusions drive oncogenic NF-κB signalling in ependymoma
Parker, Matthew, Mohankumar, Kumarasamypet M., Punchihewa, Chandanamali, Weinlich, Ricardo, Dalton, James D., Li, Yongjin, Lee, Ryan, Tatevossian, Ruth G., Phoenix, Timothy N., Thiruvenkatam, Radhika, White, Elsie, Tang, Bo, Orisme, Wilda, Gupta, Kirti, Rusch, Michael, Chen, Xiang, Li, Yuxin, Nagahawhatte, Panduka, Hedlund, Erin, Finkelstein, David, Wu, Gang, Shurtleff, Sheila, Easton, John, Boggs, Kristy, Yergeau, Donald, Vadodaria, Bhavin, Mulder, Heather L., Becksfort, Jared, Gupta, Pankaj, Huether, Robert, Ma, Jing, Song, Guangchun, Gajjar, Amar, Merchant, Thomas, Boop, Frederick, Smith, Amy A., Ding, Li, Lu, Charles, Ochoa, Kerri, Zhao, David, Fulton, Robert S., Fulton, Lucinda L., Mardis, Elaine R., Wilson, Richard K., Downing, James R., Green, Douglas R., Zhang, Jinghui, Ellison, David W., Gilbertson, Richard J.
Published in Nature (London) (27.02.2014)
Published in Nature (London) (27.02.2014)
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Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers
Govindan, Ramaswamy, Ding, Li, Griffith, Malachi, Subramanian, Janakiraman, Dees, Nathan D., Kanchi, Krishna L., Maher, Christopher A., Fulton, Robert, Fulton, Lucinda, Wallis, John, Chen, Ken, Walker, Jason, McDonald, Sandra, Bose, Ron, Ornitz, David, Xiong, Donghai, You, Ming, Dooling, David J., Watson, Mark, Mardis, Elaine R., Wilson, Richard K.
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Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas
Zhang, Jinghui, Wu, Gang, Miller, Claudia P, Tatevossian, Ruth G, Dalton, James D, Tang, Bo, Orisme, Wilda, Punchihewa, Chandanamali, Parker, Matthew, Qaddoumi, Ibrahim, Boop, Fredrick A, Lu, Charles, Kandoth, Cyriac, Ding, Li, Lee, Ryan, Huether, Robert, Chen, Xiang, Hedlund, Erin, Nagahawatte, Panduka, Rusch, Michael, Boggs, Kristy, Cheng, Jinjun, Becksfort, Jared, Ma, Jing, Song, Guangchun, Li, Yongjin, Wei, Lei, Wang, Jianmin, Shurtleff, Sheila, Easton, John, Zhao, David, Fulton, Robert S, Fulton, Lucinda L, Dooling, David J, Vadodaria, Bhavin, Mulder, Heather L, Tang, Chunlao, Ochoa, Kerri, Mullighan, Charles G, Gajjar, Amar, Kriwacki, Richard, Sheer, Denise, Gilbertson, Richard J, Mardis, Elaine R, Wilson, Richard K, Downing, James R, Baker, Suzanne J, Ellison, David W
Published in Nature genetics (01.06.2013)
Published in Nature genetics (01.06.2013)
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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
Ding, Li, Ley, Timothy J., Larson, David E., Miller, Christopher A., Koboldt, Daniel C., Welch, John S., Ritchey, Julie K., Young, Margaret A., Lamprecht, Tamara, McLellan, Michael D., McMichael, Joshua F., Wallis, John W., Lu, Charles, Shen, Dong, Harris, Christopher C., Dooling, David J., Fulton, Robert S., Fulton, Lucinda L., Chen, Ken, Schmidt, Heather, Kalicki-Veizer, Joelle, Magrini, Vincent J., Cook, Lisa, McGrath, Sean D., Vickery, Tammi L., Wendl, Michael C., Heath, Sharon, Watson, Mark A., Link, Daniel C., Tomasson, Michael H., Shannon, William D., Payton, Jacqueline E., Kulkarni, Shashikant, Westervelt, Peter, Walter, Matthew J., Graubert, Timothy A., Mardis, Elaine R., Wilson, Richard K., DiPersio, John F.
Published in Nature (London) (11.01.2012)
Published in Nature (London) (11.01.2012)
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The genetic basis of early T-cell precursor acute lymphoblastic leukaemia
Zhang, Jinghui, Ding, Li, Holmfeldt, Linda, Wu, Gang, Heatley, Sue L., Payne-Turner, Debbie, Easton, John, Chen, Xiang, Wang, Jianmin, Rusch, Michael, Lu, Charles, Chen, Shann-Ching, Wei, Lei, Collins-Underwood, J. Racquel, Ma, Jing, Roberts, Kathryn G., Pounds, Stanley B., Ulyanov, Anatoly, Becksfort, Jared, Gupta, Pankaj, Huether, Robert, Kriwacki, Richard W., Parker, Matthew, McGoldrick, Daniel J., Zhao, David, Alford, Daniel, Espy, Stephen, Bobba, Kiran Chand, Song, Guangchun, Pei, Deqing, Cheng, Cheng, Roberts, Stefan, Barbato, Michael I., Campana, Dario, Coustan-Smith, Elaine, Shurtleff, Sheila A., Raimondi, Susana C., Kleppe, Maria, Cools, Jan, Shimano, Kristin A., Hermiston, Michelle L., Doulatov, Sergei, Eppert, Kolja, Laurenti, Elisa, Notta, Faiyaz, Dick, John E., Basso, Giuseppe, Hunger, Stephen P., Loh, Mignon L., Devidas, Meenakshi, Wood, Brent, Winter, Stuart, Dunsmore, Kimberley P., Fulton, Robert S., Fulton, Lucinda L., Hong, Xin, Harris, Christopher C., Dooling, David J., Ochoa, Kerri, Johnson, Kimberly J., Obenauer, John C., Evans, William E., Pui, Ching-Hon, Naeve, Clayton W., Ley, Timothy J., Mardis, Elaine R., Wilson, Richard K., Downing, James R., Mullighan, Charles G.
Published in Nature (London) (12.01.2012)
Published in Nature (London) (12.01.2012)
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A burst of segmental duplications in the genome of the African great ape ancestor
Eichler, Evan E, Marques-Bonet, Tomas, Kidd, Jeffrey M, Ventura, Mario, Graves, Tina A, Cheng, Ze, Hillier, LaDeana W, Jiang, Zhaoshi, Baker, Carl, Malfavon-Borja, Ray, Fulton, Lucinda A, Alkan, Can, Aksay, Gozde, Girirajan, Santhosh, Siswara, Priscillia, Chen, Lin, Cardone, Maria Francesca, Navarro, Arcadi, Mardis, Elaine R, Wilson, Richard K
Published in Nature (12.02.2009)
Published in Nature (12.02.2009)
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Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
Smith, Jeramiah J, Kuraku, Shigehiro, Holt, Carson, Sauka-Spengler, Tatjana, Jiang, Ning, Campbell, Michael S, Yandell, Mark D, Manousaki, Tereza, Meyer, Axel, Bloom, Ona E, Morgan, Jennifer R, Buxbaum, Joseph D, Sachidanandam, Ravi, Sims, Carrie, Garruss, Alexander S, Cook, Malcolm, Krumlauf, Robb, Wiedemann, Leanne M, Sower, Stacia A, Decatur, Wayne A, Hall, Jeffrey A, Amemiya, Chris T, Saha, Nil R, Buckley, Katherine M, Rast, Jonathan P, Das, Sabyasachi, Hirano, Masayuki, McCurley, Nathanael, Guo, Peng, Rohner, Nicolas, Tabin, Clifford J, Piccinelli, Paul, Elgar, Greg, Ruffier, Magali, Aken, Bronwen L, Searle, Stephen M J, Muffato, Matthieu, Pignatelli, Miguel, Herrero, Javier, Jones, Matthew, Brown, C Titus, Chung-Davidson, Yu-Wen, Nanlohy, Kaben G, Libants, Scot V, Yeh, Chu-Yin, McCauley, David W, Langeland, James A, Pancer, Zeev, Fritzsch, Bernd, de Jong, Pieter J, Zhu, Baoli, Fulton, Lucinda L, Theising, Brenda, Flicek, Paul, Bronner, Marianne E, Warren, Wesley C, Clifton, Sandra W, Wilson, Richard K, Li, Weiming
Published in Nature genetics (01.04.2013)
Published in Nature genetics (01.04.2013)
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DNMT3A Mutations in Acute Myeloid Leukemia
Ley, Timothy J, Ding, Li, Walter, Matthew J, McLellan, Michael D, Lamprecht, Tamara, Larson, David E, Kandoth, Cyriac, Payton, Jacqueline E, Baty, Jack, Welch, John, Harris, Christopher C, Lichti, Cheryl F, Townsend, R. Reid, Fulton, Lucinda A, Fulton, Robert S, Dooling, David J, Koboldt, Daniel C, Schmidt, Heather, Zhang, Qunyuan, Osborne, John R, Lin, Ling, O'Laughlin, Michelle, McMichael, Joshua F, Delehaunty, Kim D, McGrath, Sean D, Magrini, Vincent J, Vickery, Tammi L, Hundal, Jasreet, Cook, Lisa L, Conyers, Joshua J, Swift, Gary W, Reed, Jerry P, Alldredge, Patricia A, Wylie, Todd, Walker, Jason, Kalicki, Joelle, Watson, Mark A, Heath, Sharon, Shannon, William D, Varghese, Nobish, Nagarajan, Rakesh, Westervelt, Peter, Tomasson, Michael H, Link, Daniel C, Graubert, Timothy A, DiPersio, John F, Mardis, Elaine R, Wilson, Richard K
Published in The New England journal of medicine (16.12.2010)
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A novel retinoblastoma therapy from genomic and epigenetic analyses
Zhang, Jinghui, Benavente, Claudia A., McEvoy, Justina, Flores-Otero, Jacqueline, Ding, Li, Chen, Xiang, Ulyanov, Anatoly, Wu, Gang, Wilson, Matthew, Wang, Jianmin, Brennan, Rachel, Rusch, Michael, Manning, Amity L., Ma, Jing, Easton, John, Shurtleff, Sheila, Mullighan, Charles, Pounds, Stanley, Mukatira, Suraj, Gupta, Pankaj, Neale, Geoff, Zhao, David, Lu, Charles, Fulton, Robert S., Fulton, Lucinda L., Hong, Xin, Dooling, David J., Ochoa, Kerri, Naeve, Clayton, Dyson, Nicholas J., Mardis, Elaine R., Bahrami, Armita, Ellison, David, Wilson, Richard K., Downing, James R., Dyer, Michael A.
Published in Nature (London) (19.01.2012)
Published in Nature (London) (19.01.2012)
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Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes
Staudová, Barbora, Strouhal, Michal, Zobaníková, Marie, Cejková, Darina, Fulton, Lucinda L, Chen, Lei, Giacani, Lorenzo, Centurion-Lara, Arturo, Bruisten, Sylvia M, Sodergren, Erica, Weinstock, George M, Smajs, David
Published in PLoS neglected tropical diseases (01.11.2014)
Published in PLoS neglected tropical diseases (01.11.2014)
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Modernizing reference genome assemblies
Church, Deanna M, Schneider, Valerie A, Graves, Tina, Auger, Katherine, Cunningham, Fiona, Bouk, Nathan, Chen, Hsiu-Chuan, Agarwala, Richa, McLaren, William M, Ritchie, Graham R S, Albracht, Derek, Kremitzki, Milinn, Rock, Susan, Kotkiewicz, Holland, Kremitzki, Colin, Wollam, Aye, Trani, Lee, Fulton, Lucinda, Fulton, Robert, Matthews, Lucy, Whitehead, Siobhan, Chow, Will, Torrance, James, Dunn, Matthew, Harden, Glenn, Threadgold, Glen, Wood, Jonathan, Collins, Joanna, Heath, Paul, Griffiths, Guy, Pelan, Sarah, Grafham, Darren, Eichler, Evan E, Weinstock, George, Mardis, Elaine R, Wilson, Richard K, Howe, Kerstin, Flicek, Paul, Hubbard, Tim
Published in PLoS biology (01.07.2011)
Published in PLoS biology (01.07.2011)
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Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence
Cejková, Darina, Zobaníková, Marie, Chen, Lei, Pospíšilová, Petra, Strouhal, Michal, Qin, Xiang, Mikalová, Lenka, Norris, Steven J, Muzny, Donna M, Gibbs, Richard A, Fulton, Lucinda L, Sodergren, Erica, Weinstock, George M, Smajs, David
Published in PLoS neglected tropical diseases (01.01.2012)
Published in PLoS neglected tropical diseases (01.01.2012)
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Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies
Zobaníková, Marie, Strouhal, Michal, Mikalová, Lenka, Cejková, Darina, Ambrožová, Lenka, Pospíšilová, Petra, Fulton, Lucinda L, Chen, Lei, Sodergren, Erica, Weinstock, George M, Smajs, David
Published in PLoS neglected tropical diseases (01.04.2013)
Published in PLoS neglected tropical diseases (01.04.2013)
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Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny
Hillier, LaDeana W, Miller, Raymond D, Baird, Scott E, Chinwalla, Asif, Fulton, Lucinda A, Koboldt, Daniel C, Waterston, Robert H
Published in PLoS biology (01.07.2007)
Published in PLoS biology (01.07.2007)
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Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma
Gutmann, David H, McLellan, Michael D, Hussain, Ibrahim, Wallis, John W, Fulton, Lucinda L, Fulton, Robert S, Magrini, Vincent, Demeter, Ryan, Wylie, Todd, Kandoth, Cyriac, Leonard, Jeffrey R, Guha, Abhijit, Miller, Christopher A, Ding, Li, Mardis, Elaine R
Published in Genome research (01.03.2013)
Published in Genome research (01.03.2013)
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The draft genome of the parasitic nematode Trichinella spiralis
Mitreva, Makedonka, Wilson, Richard K, Jasmer, Douglas P, Zarlenga, Dante S, Wang, Zhengyuan, Abubucker, Sahar, Martin, John, Taylor, Christina M, Yin, Yong, Fulton, Lucinda, Minx, Pat, Yang, Shiaw-Pyng, Warren, Wesley C, Fulton, Robert S, Bhonagiri, Veena, Zhang, Xu, Hallsworth-Pepin, Kym, Clifton, Sandra W, McCarter, James P, Appleton, Judith, Mardis, Elaine R
Published in Nature genetics (01.03.2011)
Published in Nature genetics (01.03.2011)
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