NanoVar: accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing
Tham, Cheng Yong, Tirado-Magallanes, Roberto, Goh, Yufen, Fullwood, Melissa J, Koh, Bryan T H, Wang, Wilson, Ng, Chin Hin, Chng, Wee Joo, Thiery, Alexandre, Tenen, Daniel G, Benoukraf, Touati
Published in Genome Biology (03.03.2020)
Published in Genome Biology (03.03.2020)
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Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
Cao, Fan, Zhang, Yu, Cai, Yichao, Animesh, Sambhavi, Zhang, Ying, Akincilar, Semih Can, Loh, Yan Ping, Li, Xinya, Chng, Wee Joo, Tergaonkar, Vinay, Kwoh, Chee Keong, Fullwood, Melissa J
Published in Genome Biology (16.08.2021)
Published in Genome Biology (16.08.2021)
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Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
Li, Guoliang, Ruan, Xiaoan, Auerbach, Raymond K., Sandhu, Kuljeet Singh, Zheng, Meizhen, Wang, Ping, Poh, Huay Mei, Goh, Yufen, Lim, Joanne, Zhang, Jingyao, Sim, Hui Shan, Peh, Su Qin, Mulawadi, Fabianus Hendriyan, Ong, Chin Thing, Orlov, Yuriy L., Hong, Shuzhen, Zhang, Zhizhuo, Landt, Steve, Raha, Debasish, Euskirchen, Ghia, Wei, Chia-Lin, Ge, Weihong, Wang, Huaien, Davis, Carrie, Fisher-Aylor, Katherine I., Mortazavi, Ali, Gerstein, Mark, Gingeras, Thomas, Wold, Barbara, Sun, Yi, Fullwood, Melissa J., Cheung, Edwin, Liu, Edison, Sung, Wing-Kin, Snyder, Michael, Ruan, Yijun
Published in Cell (20.01.2012)
Published in Cell (20.01.2012)
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Interplay and cooperation between SREBF1 and master transcription factors regulate lipid metabolism and tumor-promoting pathways in squamous cancer
Li, Li-Yan, Yang, Qian, Jiang, Yan-Yi, Yang, Wei, Jiang, Yuan, Li, Xiang, Hazawa, Masaharu, Zhou, Bo, Huang, Guo-Wei, Xu, Xiu-E, Gery, Sigal, Zhang, Ying, Ding, Ling-Wen, Ho, Allen S., Zumsteg, Zachary S., Wang, Ming-Rong, Fullwood, Melissa J., Freedland, Stephen J., Meltzer, Stephen J., Xu, Li-Yan, Li, En-Min, Koeffler, H. Phillip, Lin, De-Chen
Published in Nature communications (16.07.2021)
Published in Nature communications (16.07.2021)
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Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions
Cao, Fan, Fang, Yiwen, Tan, Hong Kee, Goh, Yufen, Choy, Jocelyn Yeen Hui, Koh, Bryan Thean Howe, Hao Tan, Jiong, Bertin, Nicolas, Ramadass, Aroul, Hunter, Ewan, Green, Jayne, Salter, Matthew, Akoulitchev, Alexandre, Wang, Wilson, Chng, Wee Joo, Tenen, Daniel G, Fullwood, Melissa J
Published in Scientific reports (19.05.2017)
Published in Scientific reports (19.05.2017)
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MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification
Tian, Simon Zhongyuan, Li, Guoliang, Ning, Duo, Jing, Kai, Xu, Yewen, Yang, Yang, Fullwood, Melissa J, Yin, Pengfei, Huang, Guangyu, Plewczynski, Dariusz, Zhai, Jixian, Dai, Ziwei, Chen, Wei, Zheng, Meizhen
Published in Briefings in bioinformatics (19.11.2022)
Published in Briefings in bioinformatics (19.11.2022)
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Core-binding factor fusion downregulation of ADAR2 RNA editing contributes to AML leukemogenesis
Guo, Mingrui, Chan, Tim Hon Man, Zhou, Qiling, An, Omer, Li, Ying, Song, Yangyang, Tan, Zi Hui, Ng, Vanessa Hui En, Peramangalam, Philomina Sona, Tan, Zhi Qing, Cao, Xinang, Iwanaga, Eisaku, Matsuoka, Masao, Ooi, Melissa G. M., Jen, Wei Ying, Koh, Liang Piu, Chan, Esther, Tan, Lip Kun, Goh, Yufen, Wang, Wilson, Koh, Bryan T. H., Chun, Chan Ming, Fullwood, Melissa J., Chng, Wee Joo, Osato, Motomi, Pulikkan, John Anto, Yang, Henry, Chen, Leilei, Tenen, Daniel G.
Published in Blood (22.06.2023)
Published in Blood (22.06.2023)
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Chromatin Rewiring by Mismatch Repair Protein MSH2 Alters Cell Adhesion Pathways and Sensitivity to BET Inhibition in Gastric Cancer
Nargund, Amrita M, Xu, Chang, Mandoli, Amit, Okabe, Atsushi, Chen, Gao Bin, Huang, Kie Kyon, Sheng, Taotao, Yao, Xiaosai, Teo, Jia Ming Nickolas, Sundar, Raghav, Kok, Yee Jiun, See, Yi Xiang, Xing, Manjie, Li, Zhimei, Yong, Chern Han, Anand, Aparna, A I, Zul Fazreen, Poon, Lai Fong, Ng, Michelle Shu Wen, Koh, Javier Yu Peng, Ooi, Wen Fong, Tay, Su Ting, Ong, Xuewen, Tan, Angie Lay Keng, Grabsch, Heike I, Fullwood, Melissa J, Teh, Tean Bin, Bi, Xuezhi, Kaneda, Atsushi, Li, Shang, Tan, Patrick
Published in Cancer research (Chicago, Ill.) (18.07.2022)
Published in Cancer research (Chicago, Ill.) (18.07.2022)
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ChIA-PET analysis of transcriptional chromatin interactions
Zhang, Jingyao, Poh, Huay Mei, Peh, Su Qin, Sia, Yee Yen, Li, Guoliang, Mulawadi, Fabianus Hendriyan, Goh, Yufen, Fullwood, Melissa J., Sung, Wing-Kin, Ruan, Xiaoan, Ruan, Yijun
Published in Methods (San Diego, Calif.) (01.11.2012)
Published in Methods (San Diego, Calif.) (01.11.2012)
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MCI-frcnn: A deep learning method for topological micro-domain boundary detection
Tian, Simon Zhongyuan, Yin, Pengfei, Jing, Kai, Yang, Yang, Xu, Yewen, Huang, Guangyu, Ning, Duo, Fullwood, Melissa J, Zheng, Meizhen
Published in Frontiers in cell and developmental biology (30.11.2022)
Published in Frontiers in cell and developmental biology (30.11.2022)
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Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
Fullwood, Melissa J, Wei, Chia-Lin, Liu, Edison T, Ruan, Yijun
Published in Genome research (01.04.2009)
Published in Genome research (01.04.2009)
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Chromatin Interactions and Regulatory Elements in Cancer: From Bench to Bedside
See, Yi Xiang, Wang, Benny Zhengjie, Fullwood, Melissa J.
Published in Trends in genetics (01.02.2019)
Published in Trends in genetics (01.02.2019)
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Next-generation sequencing of apoptotic DNA breakpoints reveals association with actively transcribed genes and gene translocations
Fullwood, Melissa J, Lee, Joanne, Lin, Lifang, Li, Guoliang, Huss, Mikael, Ng, Patrick, Sung, Wing-Kin, Shenolikar, Shirish
Published in PloS one (08.11.2011)
Published in PloS one (08.11.2011)
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