Producing polished prokaryotic pangenomes with the Panaroo pipeline
Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
Published in Genome Biology (22.07.2020)
Published in Genome Biology (22.07.2020)
Get full text
Journal Article
Eight challenges in phylodynamic inference
Frost, Simon D.W, Pybus, Oliver G, Gog, Julia R, Viboud, Cecile, Bonhoeffer, Sebastian, Bedford, Trevor
Published in Epidemics (01.03.2015)
Published in Epidemics (01.03.2015)
Get full text
Journal Article
VGEA: an RNA viral assembly toolkit
Oluniyi, Paul E, Ajogbasile, Fehintola, Oguzie, Judith, Uwanibe, Jessica, Kayode, Adeyemi, Happi, Anise, Ugwu, Alphonsus, Olumade, Testimony, Ogunsanya, Olusola, Eromon, Philomena Ehiaghe, Folarin, Onikepe, Frost, Simon D W, Heeney, Jonathan, Happi, Christian T
Published in PeerJ (San Francisco, CA) (06.09.2021)
Published in PeerJ (San Francisco, CA) (06.09.2021)
Get full text
Journal Article
GARD: a genetic algorithm for recombination detection
Kosakovsky Pond, Sergei L., Posada, David, Gravenor, Michael B., Woelk, Christopher H., Frost, Simon D.W.
Published in Bioinformatics (15.12.2006)
Published in Bioinformatics (15.12.2006)
Get full text
Journal Article
An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1
Kosakovsky Pond, Sergei L, Posada, David, Stawiski, Eric, Chappey, Colombe, Poon, Art F Y, Hughes, Gareth, Fearnhill, Esther, Gravenor, Mike B, Leigh Brown, Andrew J, Frost, Simon D W
Published in PLoS computational biology (01.11.2009)
Published in PLoS computational biology (01.11.2009)
Get full text
Journal Article
Can non-lytic CD8+ T cells drive HIV-1 escape?
Seich Al Basatena, Nafisa-Katrin, Chatzimichalis, Konstantinos, Graw, Frederik, Frost, Simon D W, Regoes, Roland R, Asquith, Becca
Published in PLoS pathogens (01.11.2013)
Published in PLoS pathogens (01.11.2013)
Get full text
Journal Article
Deep molecular characterization of HIV-1 dynamics under suppressive HAART
Buzón, Maria J, Codoñer, Francisco M, Frost, Simon D W, Pou, Christian, Puertas, Maria C, Massanella, Marta, Dalmau, Judith, Llibre, Josep M, Stevenson, Mario, Blanco, Julià, Clotet, Bonaventura, Paredes, Roger, Martinez-Picado, Javier
Published in PLoS pathogens (01.10.2011)
Published in PLoS pathogens (01.10.2011)
Get full text
Journal Article
HIV-1 Transmission linkages among persons with incident infection to inform public health surveillance
Dennis, Ann M., Frost, Simon D.W., Enders, Kimberly, Cressman, Andrew E., Volz, Erik, Adams, Nicole, Miller, William C., Cohen, Myron S., Mobley, Victoria, Samoff, Erika, Eron, Joseph J.
Published in EClinicalMedicine (01.07.2021)
Published in EClinicalMedicine (01.07.2021)
Get full text
Journal Article
Low-level plasma HIVs in patients on prolonged suppressive highly active antiretroviral therapy are produced mostly by cells other than CD4 T-cells
Sahu, Gautam K, Paar, David, Frost, Simon D.W, Smith, Melissa M, Weaver, Scott, Cloyd, Miles W
Published in Journal of medical virology (2009)
Published in Journal of medical virology (2009)
Get full text
Journal Article
Evolution of the interferon alpha gene family in eutherian mammals
Woelk, Christopher H., Frost, Simon D.W., Richman, Douglas D., Higley, Prentice E., Kosakovsky Pond, Sergei L.
Published in Gene (01.08.2007)
Published in Gene (01.08.2007)
Get full text
Journal Article