Comparison of computational methods for Hi-C data analysis
Forcato, Mattia, Nicoletti, Chiara, Pal, Koustav, Livi, Carmen Maria, Ferrari, Francesco, Bicciato, Silvio
Published in Nature methods (01.07.2017)
Published in Nature methods (01.07.2017)
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Computational methods for the integrative analysis of single-cell data
Forcato, Mattia, Romano, Oriana, Bicciato, Silvio
Published in Briefings in bioinformatics (18.01.2021)
Published in Briefings in bioinformatics (18.01.2021)
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Genome-wide association between YAP/TAZ/TEAD and AP-1 at enhancers drives oncogenic growth
Zanconato, Francesca, Forcato, Mattia, Battilana, Giusy, Azzolin, Luca, Quaranta, Erika, Bodega, Beatrice, Rosato, Antonio, Bicciato, Silvio, Cordenonsi, Michelangelo, Piccolo, Stefano
Published in Nature cell biology (01.09.2015)
Published in Nature cell biology (01.09.2015)
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Transcriptional addiction in cancer cells is mediated by YAP/TAZ through BRD4
Zanconato, Francesca, Battilana, Giusy, Forcato, Mattia, Filippi, Letizia, Azzolin, Luca, Manfrin, Andrea, Quaranta, Erika, Di Biagio, Daniele, Sigismondo, Gianluca, Guzzardo, Vincenza, Lejeune, Pascale, Haendler, Bernard, Krijgsveld, Jeroen, Fassan, Matteo, Bicciato, Silvio, Cordenonsi, Michelangelo, Piccolo, Stefano
Published in Nature medicine (01.10.2018)
Published in Nature medicine (01.10.2018)
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The Hippo Transducer TAZ Confers Cancer Stem Cell-Related Traits on Breast Cancer Cells
Cordenonsi, Michelangelo, Zanconato, Francesca, Azzolin, Luca, Forcato, Mattia, Rosato, Antonio, Frasson, Chiara, Inui, Masafumi, Montagner, Marco, Parenti, Anna R., Poletti, Alessandro, Daidone, Maria Grazia, Dupont, Sirio, Basso, Giuseppe, Bicciato, Silvio, Piccolo, Stefano
Published in Cell (11.11.2011)
Published in Cell (11.11.2011)
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Glucocorticoid receptor signalling activates YAP in breast cancer
Sorrentino, Giovanni, Ruggeri, Naomi, Zannini, Alessandro, Ingallina, Eleonora, Bertolio, Rebecca, Marotta, Carolina, Neri, Carmelo, Cappuzzello, Elisa, Forcato, Mattia, Rosato, Antonio, Mano, Miguel, Bicciato, Silvio, Del Sal, Giannino
Published in Nature communications (19.01.2017)
Published in Nature communications (19.01.2017)
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Transcription Factor-Directed Re-wiring of Chromatin Architecture for Somatic Cell Nuclear Reprogramming toward trans-Differentiation
Dall’Agnese, Alessandra, Caputo, Luca, Nicoletti, Chiara, di Iulio, Julia, Schmitt, Anthony, Gatto, Sole, Diao, Yarui, Ye, Zhen, Forcato, Mattia, Perera, Ranjan, Bicciato, Silvio, Telenti, Amalio, Ren, Bing, Puri, Pier Lorenzo
Published in Molecular cell (07.11.2019)
Published in Molecular cell (07.11.2019)
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The mutant p53‐ID4 complex controls VEGFA isoforms by recruiting lncRNA MALAT1
Pruszko, Magdalena, Milano, Elisa, Forcato, Mattia, Donzelli, Sara, Ganci, Federica, Di Agostino, Silvia, De Panfilis, Simone, Fazi, Francesco, Bates, David O, Bicciato, Silvio, Zylicz, Maciej, Zylicz, Alicja, Blandino, Giovanni, Fontemaggi, Giulia
Published in EMBO reports (01.08.2017)
Published in EMBO reports (01.08.2017)
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Single-keratinocyte transcriptomic analyses identify different clonal types and proliferative potential mediated by FOXM1 in human epidermal stem cells
Enzo, Elena, Secone Seconetti, Alessia, Forcato, Mattia, Tenedini, Elena, Polito, Maria Pia, Sala, Irene, Carulli, Sonia, Contin, Roberta, Peano, Clelia, Tagliafico, Enrico, Bicciato, Silvio, Bondanza, Sergio, De Luca, Michele
Published in Nature communications (04.05.2021)
Published in Nature communications (04.05.2021)
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Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ
Della Chiara, Giulia, Gervasoni, Federica, Fakiola, Michaela, Godano, Chiara, D’Oria, Claudia, Azzolin, Luca, Bonnal, Raoul Jean Pierre, Moreni, Giulia, Drufuca, Lorenzo, Rossetti, Grazisa, Ranzani, Valeria, Bason, Ramona, De Simone, Marco, Panariello, Francesco, Ferrari, Ivan, Fabbris, Tanya, Zanconato, Francesca, Forcato, Mattia, Romano, Oriana, Caroli, Jimmy, Gruarin, Paola, Sarnicola, Maria Lucia, Cordenonsi, Michelangelo, Bardelli, Alberto, Zucchini, Nicola, Ceretti, Andrea Pisani, Mariani, Nicolò Maria, Cassingena, Andrea, Sartore-Bianchi, Andrea, Testa, Giuseppe, Gianotti, Luca, Opocher, Enrico, Pisati, Federica, Tripodo, Claudio, Macino, Giuseppe, Siena, Salvatore, Bicciato, Silvio, Piccolo, Stefano, Pagani, Massimiliano
Published in Nature communications (20.04.2021)
Published in Nature communications (20.04.2021)
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Circulating mucosal-associated invariant T cells identify patients responding to anti-PD-1 therapy
De Biasi, Sara, Gibellini, Lara, Lo Tartaro, Domenico, Puccio, Simone, Rabacchi, Claudio, Mazza, Emilia M. C., Brummelman, Jolanda, Williams, Brandon, Kaihara, Kelly, Forcato, Mattia, Bicciato, Silvio, Pinti, Marcello, Depenni, Roberta, Sabbatini, Roberto, Longo, Caterina, Dominici, Massimo, Pellacani, Giovanni, Lugli, Enrico, Cossarizza, Andrea
Published in Nature communications (15.03.2021)
Published in Nature communications (15.03.2021)
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Transcriptional profiling of human bronchial epithelial cell BEAS-2B exposed to diesel and biomass ultrafine particles
Grilli, Andrea, Bengalli, Rossella, Longhin, Eleonora, Capasso, Laura, Proverbio, Maria Carla, Forcato, Mattia, Bicciato, Silvio, Gualtieri, Maurizio, Battaglia, Cristina, Camatini, Marina
Published in BMC genomics (27.04.2018)
Published in BMC genomics (27.04.2018)
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MRF4 negatively regulates adult skeletal muscle growth by repressing MEF2 activity
Moretti, Irene, Ciciliot, Stefano, Dyar, Kenneth A., Abraham, Reimar, Murgia, Marta, Agatea, Lisa, Akimoto, Takayuki, Bicciato, Silvio, Forcato, Mattia, Pierre, Philippe, Uhlenhaut, N. Henriette, Rigby, Peter W. J., Carvajal, Jaime J., Blaauw, Bert, Calabria, Elisa, Schiaffino, Stefano
Published in Nature communications (03.08.2016)
Published in Nature communications (03.08.2016)
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The transcriptional regulator ZNF398 mediates pluripotency and epithelial character downstream of TGF-beta in human PSCs
Zorzan, Irene, Pellegrini, Marco, Arboit, Mattia, Incarnato, Danny, Maldotti, Mara, Forcato, Mattia, Tagliazucchi, Guidantonio Malagoli, Carbognin, Elena, Montagner, Marco, Oliviero, Salvatore, Martello, Graziano
Published in Nature communications (12.05.2020)
Published in Nature communications (12.05.2020)
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Global chromatin conformation differences in the Drosophila dosage compensated chromosome X
Pal, Koustav, Forcato, Mattia, Jost, Daniel, Sexton, Thomas, Vaillant, Cédric, Salviato, Elisa, Mazza, Emilia Maria Cristina, Lugli, Enrico, Cavalli, Giacomo, Ferrari, Francesco
Published in Nature communications (25.11.2019)
Published in Nature communications (25.11.2019)
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Dynamic Effects of Topoisomerase I Inhibition on R-Loops and Short Transcripts at Active Promoters
Marinello, Jessica, Bertoncini, Stefania, Aloisi, Iris, Cristini, Agnese, Malagoli Tagliazucchi, Guidantonio, Forcato, Mattia, Sordet, Olivier, Capranico, Giovanni
Published in PloS one (19.01.2016)
Published in PloS one (19.01.2016)
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Evidence for mitochondrial Lonp1 expression in the nucleus
Gibellini, Lara, Borella, Rebecca, De Gaetano, Anna, Zanini, Giada, Tartaro, Domenico Lo, Carnevale, Gianluca, Beretti, Francesca, Losi, Lorena, De Biasi, Sara, Nasi, Milena, Forcato, Mattia, Cossarizza, Andrea, Pinti, Marcello
Published in Scientific reports (27.06.2022)
Published in Scientific reports (27.06.2022)
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Muscle insulin sensitivity and glucose metabolism are controlled by the intrinsic muscle clock
Dyar, Kenneth A, Ciciliot, Stefano, Wright, Lauren E, Biensø, Rasmus S, Tagliazucchi, Guidantonio M, Patel, Vishal R, Forcato, Mattia, Paz, Marcia I.P, Gudiksen, Anders, Solagna, Francesca, Albiero, Mattia, Moretti, Irene, Eckel-Mahan, Kristin L, Baldi, Pierre, Sassone-Corsi, Paolo, Rizzuto, Rosario, Bicciato, Silvio, Pilegaard, Henriette, Blaauw, Bert, Schiaffino, Stefano
Published in Molecular metabolism (Germany) (01.02.2014)
Published in Molecular metabolism (Germany) (01.02.2014)
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Glycolysis downregulation is a hallmark of HIV‐1 latency and sensitizes infected cells to oxidative stress
Shytaj, Iart Luca, Procopio, Francesco Andrea, Tarek, Mohammad, Carlon‐Andres, Irene, Tang, Hsin‐Yao, Goldman, Aaron R, Munshi, MohamedHusen, Kumar Pal, Virender, Forcato, Mattia, Sreeram, Sheetal, Leskov, Konstantin, Ye, Fengchun, Lucic, Bojana, Cruz, Nicolly, Ndhlovu, Lishomwa C, Bicciato, Silvio, Padilla‐Parra, Sergi, Diaz, Ricardo Sobhie, Singh, Amit, Lusic, Marina, Karn, Jonathan, Alvarez‐Carbonell, David, Savarino, Andrea
Published in EMBO molecular medicine (09.08.2021)
Published in EMBO molecular medicine (09.08.2021)
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