Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Kalvari, Ioanna, Nawrocki, Eric P, Ontiveros-Palacios, Nancy, Argasinska, Joanna, Lamkiewicz, Kevin, Marz, Manja, Griffiths-Jones, Sam, Toffano-Nioche, Claire, Gautheret, Daniel, Weinberg, Zasha, Rivas, Elena, Eddy, Sean R, Finn, Robert D, Bateman, Alex, Petrov, Anton I
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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A new genomic blueprint of the human gut microbiota
Almeida, Alexandre, Mitchell, Alex L., Boland, Miguel, Forster, Samuel C., Gloor, Gregory B., Tarkowska, Aleksandra, Lawley, Trevor D., Finn, Robert D.
Published in Nature (London) (01.04.2019)
Published in Nature (London) (01.04.2019)
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The EMBL-EBI search and sequence analysis tools APIs in 2019
Madeira, Fábio, Park, Young Mi, Lee, Joon, Buso, Nicola, Gur, Tamer, Madhusoodanan, Nandana, Basutkar, Prasad, Tivey, Adrian R N, Potter, Simon C, Finn, Robert D, Lopez, Rodrigo
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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A unified catalog of 204,938 reference genomes from the human gut microbiome
Almeida, Alexandre, Nayfach, Stephen, Boland, Miguel, Strozzi, Francesco, Beracochea, Martin, Shi, Zhou Jason, Pollard, Katherine S., Sakharova, Ekaterina, Parks, Donovan H., Hugenholtz, Philip, Segata, Nicola, Kyrpides, Nikos C., Finn, Robert D.
Published in Nature biotechnology (01.01.2021)
Published in Nature biotechnology (01.01.2021)
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Pfam: The protein families database in 2021
Mistry, Jaina, Chuguransky, Sara, Williams, Lowri, Qureshi, Matloob, Salazar, Gustavo A, Sonnhammer, Erik L L, Tosatto, Silvio C E, Paladin, Lisanna, Raj, Shriya, Richardson, Lorna J, Finn, Robert D, Bateman, Alex
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
Kalvari, Ioanna, Argasinska, Joanna, Quinones-Olvera, Natalia, Nawrocki, Eric P, Rivas, Elena, Eddy, Sean R, Bateman, Alex, Finn, Robert D, Petrov, Anton I
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
Mistry, Jaina, Finn, Robert D, Eddy, Sean R, Bateman, Alex, Punta, Marco
Published in Nucleic acids research (01.07.2013)
Published in Nucleic acids research (01.07.2013)
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The Dfam database of repetitive DNA families
Hubley, Robert, Finn, Robert D, Clements, Jody, Eddy, Sean R, Jones, Thomas A, Bao, Weidong, Smit, Arian F A, Wheeler, Travis J
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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MGnify: the microbiome analysis resource in 2020
Mitchell, Alex L, Almeida, Alexandre, Beracochea, Martin, Boland, Miguel, Burgin, Josephine, Cochrane, Guy, Crusoe, Michael R, Kale, Varsha, Potter, Simon C, Richardson, Lorna J, Sakharova, Ekaterina, Scheremetjew, Maxim, Korobeynikov, Anton, Shlemov, Alex, Kunyavskaya, Olga, Lapidus, Alla, Finn, Robert D
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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The European Bioinformatics Institute in 2016: Data growth and integration
Cook, Charles E, Bergman, Mary Todd, Finn, Robert D, Cochrane, Guy, Birney, Ewan, Apweiler, Rolf
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models
Rangel-Pineros, Guillermo, Almeida, Alexandre, Beracochea, Martin, Sakharova, Ekaterina, Marz, Manja, Reyes Muñoz, Alejandro, Hölzer, Martin, Finn, Robert D
Published in PLoS computational biology (01.08.2023)
Published in PLoS computational biology (01.08.2023)
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iPfam: a database of protein family and domain interactions found in the Protein Data Bank
Finn, Robert D, Miller, Benjamin L, Clements, Jody, Bateman, Alex
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
Yates, Andrew D, Allen, James, Amode, Ridwan M, Azov, Andrey G, Barba, Matthieu, Becerra, Andrés, Bhai, Jyothish, Campbell, Lahcen I, Carbajo Martinez, Manuel, Chakiachvili, Marc, Chougule, Kapeel, Christensen, Mikkel, Contreras-Moreira, Bruno, Cuzick, Alayne, Da Rin Fioretto, Luca, Davis, Paul, De Silva, Nishadi H, Diamantakis, Stavros, Dyer, Sarah, Elser, Justin, Filippi, Carla V, Gall, Astrid, Grigoriadis, Dionysios, Guijarro-Clarke, Cristina, Gupta, Parul, Hammond-Kosack, Kim E, Howe, Kevin L, Jaiswal, Pankaj, Kaikala, Vinay, Kumar, Vivek, Kumari, Sunita, Langridge, Nick, Le, Tuan, Luypaert, Manuel, Maslen, Gareth L, Maurel, Thomas, Moore, Benjamin, Muffato, Matthieu, Mushtaq, Aleena, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Parker, Anne, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Quinton-Tulloch, Mark, Rodgers, Faye, Rosello, Marc, Ruffier, Magali, Seager, James, Sitnik, Vasily, Szpak, Michal, Tate, John, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Ware, Doreen, Wei, Sharon, Williams, Gary, Winterbottom, Andrea, Zarowiecki, Magdalena, Finn, Robert D, Flicek, Paul
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Alterations in the endocannabinoid system in the rat valproic acid model of autism
Kerr, D.M., Downey, L., Conboy, M., Finn, D.P., Roche, M.
Published in Behavioural brain research (15.07.2013)
Published in Behavioural brain research (15.07.2013)
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The InterPro protein families database: the classification resource after 15 years
Mitchell, Alex, Chang, Hsin-Yu, Daugherty, Louise, Fraser, Matthew, Hunter, Sarah, Lopez, Rodrigo, McAnulla, Craig, McMenamin, Conor, Nuka, Gift, Pesseat, Sebastien, Sangrador-Vegas, Amaia, Scheremetjew, Maxim, Rato, Claudia, Yong, Siew-Yit, Bateman, Alex, Punta, Marco, Attwood, Teresa K, Sigrist, Christian J A, Redaschi, Nicole, Rivoire, Catherine, Xenarios, Ioannis, Kahn, Daniel, Guyot, Dominique, Bork, Peer, Letunic, Ivica, Gough, Julian, Oates, Matt, Haft, Daniel, Huang, Hongzhan, Natale, Darren A, Wu, Cathy H, Orengo, Christine, Sillitoe, Ian, Mi, Huaiyu, Thomas, Paul D, Finn, Robert D
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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