Massively multiplex chemical transcriptomics at single-cell resolution
Srivatsan, Sanjay R, McFaline-Figueroa, José L, Ramani, Vijay, Saunders, Lauren, Cao, Junyue, Packer, Jonathan, Pliner, Hannah A, Jackson, Dana L, Daza, Riza M, Christiansen, Lena, Zhang, Fan, Steemers, Frank, Shendure, Jay, Trapnell, Cole
Published in Science (American Association for the Advancement of Science) (03.01.2020)
Published in Science (American Association for the Advancement of Science) (03.01.2020)
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Journal Article
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana
Jean-Baptiste, Ken, McFaline-Figueroa, José L, Alexandre, Cristina M, Dorrity, Michael W, Saunders, Lauren, Bubb, Kerry L, Trapnell, Cole, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T
Published in The Plant cell (01.05.2019)
Published in The Plant cell (01.05.2019)
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Journal Article
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition
McFaline-Figueroa, José L., Hill, Andrew J., Qiu, Xiaojie, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Published in Nature genetics (01.09.2019)
Published in Nature genetics (01.09.2019)
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Journal Article
Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna, Adey, Andrew C., Steemers, Frank J., Shendure, Jay, Trapnell, Cole
Published in Molecular cell (06.09.2018)
Published in Molecular cell (06.09.2018)
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Journal Article
A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
Gasperini, Molly, Hill, Andrew J., McFaline-Figueroa, José L., Martin, Beth, Kim, Seungsoo, Zhang, Melissa D., Jackson, Dana, Leith, Anh, Schreiber, Jacob, Noble, William S., Trapnell, Cole, Ahituv, Nadav, Shendure, Jay
Published in Cell (10.01.2019)
Published in Cell (10.01.2019)
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Journal Article
Relation between resting amygdalar activity and cardiovascular events: a longitudinal and cohort study
Tawakol, Ahmed, Dr, Ishai, Amorina, MD, Takx, Richard AP, MD, Figueroa, Amparo L, MD, Ali, Abdelrahman, MD, Kaiser, Yannick, BS, Truong, Quynh A, MD, Solomon, Chloe JE, BS, Calcagno, Claudia, MD, Mani, Venkatesh, PhD, Tang, Cheuk Y, PhD, Mulder, Willem JM, Prof, Murrough, James W, MD, Hoffmann, Udo, Prof, Nahrendorf, Matthias, MD, Shin, Lisa M, PhD, Fayad, Zahi A, Prof, Pitman, Roger K, Prof
Published in The Lancet (British edition) (25.02.2017)
Published in The Lancet (British edition) (25.02.2017)
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Journal Article
On the design of CRISPR-based single-cell molecular screens
Hill, Andrew J, McFaline-Figueroa, José L, Starita, Lea M, Gasperini, Molly J, Matreyek, Kenneth A, Packer, Jonathan, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Published in Nature methods (01.04.2018)
Published in Nature methods (01.04.2018)
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Journal Article
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
Cao, Junyue, Cusanovich, Darren A, Ramani, Vijay, Aghamirzaie, Delasa, Pliner, Hannah A, Hill, Andrew J, Daza, Riza M, McFaline-Figueroa, Jose L, Packer, Jonathan S, Christiansen, Lena, Steemers, Frank J, Adey, Andrew C, Trapnell, Cole, Shendure, Jay
Published in Science (American Association for the Advancement of Science) (28.09.2018)
Published in Science (American Association for the Advancement of Science) (28.09.2018)
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Journal Article
Stochastic fluctuations of bosonic dark matter
Centers, Gary P., Blanchard, John W., Conrad, Jan, Figueroa, Nataniel L., Garcon, Antoine, Gramolin, Alexander V., Kimball, Derek F. Jackson, Lawson, Matthew, Pelssers, Bart, Smiga, Joseph A., Sushkov, Alexander O., Wickenbrock, Arne, Budker, Dmitry, Derevianko, Andrei
Published in Nature communications (16.12.2021)
Published in Nature communications (16.12.2021)
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Journal Article
The interactive effects of stratospheric ozone depletion, UV radiation, and climate change on aquatic ecosystems
Williamson, Craig E, Neale, Patrick J, Hylander, Samuel, Rose, Kevin C, Figueroa, Félix L, Robinson, Sharon A, Häder, Donat-P, Wängberg, Sten-Åke, Worrest, Robert C
Published in Photochemical & photobiological sciences (2019)
Published in Photochemical & photobiological sciences (2019)
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Journal Article
Could secondary flows have made possible the cross-strait transport and explosive invasion of Rugulopteryx okamurae algae in the Strait of Gibraltar?
García-Lafuente, Jesús, Nadal, Irene, Sammartino, Simone, Korbee, Nathalie, Figueroa, Félix L
Published in PloS one (23.05.2023)
Published in PloS one (23.05.2023)
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Journal Article
Predicting sample size required for classification performance
Figueroa, Rosa L, Zeng-Treitler, Qing, Kandula, Sasikiran, Ngo, Long H
Published in BMC medical informatics and decision making (15.02.2012)
Published in BMC medical informatics and decision making (15.02.2012)
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Journal Article
The CARE Principles for Indigenous Data Governance
Carroll, Stephanie Russo, Garba, Ibrahim, Figueroa-Rodríguez, Oscar L, Holbrook, Jarita, Lovett, Raymond, Materechera, Simeon, Parsons, Mark, Raseroka, Kay, Rodriguez-Lonebear, Desi, Rowe, Robyn, Sara, Rodrigo, Walker, Jennifer D, Anderson, Jane, Hudson, Maui
Published in Data science journal (04.11.2020)
Published in Data science journal (04.11.2020)
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Journal Article
The promise of single-cell genomics in plants
McFaline-Figueroa, José L, Trapnell, Cole, Cuperus, Josh T
Published in Current opinion in plant biology (01.04.2020)
Published in Current opinion in plant biology (01.04.2020)
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Journal Article
Predicting cellular responses to complex perturbations in high‐throughput screens
Lotfollahi, Mohammad, Klimovskaia Susmelj, Anna, De Donno, Carlo, Hetzel, Leon, Ji, Yuge, Ibarra, Ignacio L, Srivatsan, Sanjay R, Naghipourfar, Mohsen, Daza, Riza M, Martin, Beth, Shendure, Jay, McFaline‐Figueroa, Jose L, Boyeau, Pierre, Wolf, F Alexander, Yakubova, Nafissa, Günnemann, Stephan, Trapnell, Cole, Lopez‐Paz, David, Theis, Fabian J
Published in Molecular systems biology (12.06.2023)
Published in Molecular systems biology (12.06.2023)
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Journal Article
Effects of UV Radiation on Photosynthesis, Antioxidant Capacity and the Accumulation of Bioactive Compounds in Gracilariopsis longissima, Hydropuntia cornea and Halopithys incurva (Rhodophyta)
Álvarez‐Gómez, Félix, Korbee, Nathalie, Figueroa, Félix L., Henley, W.
Published in Journal of phycology (01.12.2019)
Published in Journal of phycology (01.12.2019)
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Journal Article