Use of Whole-Genome Sequencing in the Investigation of a Nosocomial Influenza Virus Outbreak
Houlihan, Catherine F, Frampton, Dan, Ferns, R Bridget, Raffle, Jade, Grant, Paul, Reidy, Myriam, Hail, Leila, Thomson, Kirsty, Mattes, Frank, Kozlakidis, Zisis, Pillay, Deenan, Hayward, Andrew, Nastouli, Eleni
Published in The Journal of infectious diseases (22.09.2018)
Published in The Journal of infectious diseases (22.09.2018)
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Journal Article
IVA: accurate de novo assembly of RNA virus genomes
Hunt, Martin, Gall, Astrid, Ong, Swee Hoe, Brener, Jacqui, Ferns, Bridget, Goulder, Philip, Nastouli, Eleni, Keane, Jacqueline A, Kellam, Paul, Otto, Thomas D
Published in Bioinformatics (15.07.2015)
Published in Bioinformatics (15.07.2015)
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Journal Article
Instability of 8E5 calibration standard revealed by digital PCR risks inaccurate quantification of HIV DNA in clinical samples by qPCR
Busby, Eloise, Whale, Alexandra S., Ferns, R. Bridget, Grant, Paul R., Morley, Gary, Campbell, Jonathan, Foy, Carole A., Nastouli, Eleni, Huggett, Jim F., Garson, Jeremy A.
Published in Scientific reports (26.04.2017)
Published in Scientific reports (26.04.2017)
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Journal Article
Universal Amplification, Next-Generation Sequencing, and Assembly of HIV-1 Genomes
GALL, Astrid, FERNS, Bridget, MORRIS, Clare, WATSON, Simon, COTTEN, Matthew, ROBINSON, Mark, BERRY, Neil, PILLAY, Deenan, KELLAM, Paul
Published in Journal of Clinical Microbiology (01.12.2012)
Published in Journal of Clinical Microbiology (01.12.2012)
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Journal Article
A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project
Yebra, Gonzalo, Frampton, Dan, Gallo Cassarino, Tiziano, Raffle, Jade, Hubb, Jonathan, Ferns, R Bridget, Waters, Laura, Tong, C Y William, Kozlakidis, Zisis, Hayward, Andrew, Kellam, Paul, Pillay, Deenan, Clark, Duncan, Nastouli, Eleni, Leigh Brown, Andrew J
Published in PloS one (01.02.2018)
Published in PloS one (01.02.2018)
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A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism
Grant, Heather E, Roy, Sunando, Williams, Rachel, Tutill, Helena, Ferns, Bridget, Cane, Patricia A, Carswell, J Wilson, Ssemwanga, Deogratius, Kaleebu, Pontiano, Breuer, Judith, Leigh Brown, Andrew J
Published in Retrovirology (13.12.2022)
Published in Retrovirology (13.12.2022)
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Journal Article
Ultra-rapid, sensitive and specific digital diagnosis of HIV with a dual-channel SAW biosensor in a pilot clinical study
Gray, Eleanor R., Turbé, Valérian, Lawson, Victoria E., Page, Robin H., Cook, Zara C., Ferns, R. Bridget, Nastouli, Eleni, Pillay, Deenan, Yatsuda, Hiromi, Athey, Dale, McKendry, Rachel A.
Published in NPJ digital medicine (17.08.2018)
Published in NPJ digital medicine (17.08.2018)
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Journal Article
A Phylogenetic Analysis of Human Immunodeficiency Virus Type 1 Sequences in Kiev: Findings Among Key Populations
Fearnhill, Esther, Gourlay, Annabelle, Malyuta, Ruslan, Simmons, Ruth, Ferns, R. Bridget, Grant, Paul, Nastouli, Eleni, Karnets, Iryna, Murphy, Gary, Medoeva, Antonia, Kruglov, Yuri, Yurchenko, Alexander, Porter, Kholoud
Published in Clinical infectious diseases (01.10.2017)
Published in Clinical infectious diseases (01.10.2017)
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Journal Article
Cost analysis of standard Sanger sequencing versus next generation sequencing in the ICONIC study
Patel, Nishma, MSc, Ferns, Bridget R, PhD, Nastouli, Eleni, MD, Kozlakidis, Zisis, PhD, Kellam, Paul, PhD, Morris, Stephen, PhD
Published in The Lancet (British edition) (01.11.2016)
Published in The Lancet (British edition) (01.11.2016)
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Near Full-length Genomic Sequencing and Molecular Analysis of HIV-Infected Individuals in a Network-based Intervention (TRIP) in Athens, Greece: Evidence that Transmissions Occur More Frequently from those with High HIV-RNA
Kostaki, Evangelia-Georgia, Frampton, Daniel, Paraskevis, Dimitrios, Pantavou, Katerina, Ferns, Bridget, Raffle, Jade, Grant, Paul, Kozlakidis, Zisis, Hadjikou, Andria, Pavlitina, Eirini, Williams, Leslie D, Hatzakis, Angelos, Friedman, Samuel R, Nastouli, Eleni, Nikolopoulos, Georgios K
Published in Current HIV research (01.01.2018)
Published in Current HIV research (01.01.2018)
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Bigger and Better? Representativeness of the Influenza A Surveillance Using One Consolidated Clinical Microbiology Laboratory Data Set as Compared to the Belgian Sentinel Network of Laboratories
Van den Wijngaert, Sigi, Bossuyt, Nathalie, Ferns, Bridget, Busson, Laurent, Serrano, Gabriela, Wautier, Magali, Thomas, Isabelle, Byott, Matthew, Dupont, Yves, Nastouli, Eleni, Hallin, Marie, Kozlakidis, Zisis, Vandenberg, Olivier
Published in Frontiers in public health (18.06.2019)
Published in Frontiers in public health (18.06.2019)
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Journal Article
Emergence of a novel subclade of influenza A(H3N2) virus in London, December 2016 to January 2017
Harvala, Heli, Frampton, Dan, Grant, Paul, Raffle, Jade, Ferns, Ruth Bridget, Kozlakidis, Zisis, Kellam, Paul, Pillay, Deenan, Hayward, Andrew, Nastouli, Eleni
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (23.02.2017)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (23.02.2017)
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Quality Control Assessment of Human Immunodeficiency Virus Type 2 (HIV-2) Viral Load Quantification Assays: Results from an International Collaboration on HIV-2 Infection in 2006
DAMOND, Florence, BENARD, Antoine, FERNS, Bridget, MATHERON, Sophie, CHENE, Geneviève, BRUN-VEZINET, Francoise, RUELLE, Jean, ALABI, Abraham, KUPFER, Bernd, GOMES, Perpetua, RODES, Berta, ALBERT, Jan, BÖNI, Jürg, GARSON, Jeremy
Published in Journal of Clinical Microbiology (01.06.2008)
Published in Journal of Clinical Microbiology (01.06.2008)
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Journal Article
An International Collaboration To Standardize HIV-2 Viral Load Assays: Results from the 2009 ACHIEV2E Quality Control Study
DAMOND, F, BENARD, A, GOTTLIEB, Geoffrey, KUPFER, Bernd, RUELLE, Jean, RODES, Berta, SORIANO, Vicente, WAINBERG, Mark, TAIEB, Audrey, MATHERON, Sophie, CHENE, Genevieve, BRUN-VEZINET, Francoise, BALOTTA, Claudia, BÖNI, Jürg, COTTEN, Matthew, DUQUE, Vitor, FERNS, Bridget, GARSON, Jeremy, GOMES, Perpetua, GONCALVES, Fátima
Published in Journal of Clinical Microbiology (01.10.2011)
Published in Journal of Clinical Microbiology (01.10.2011)
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Journal Article
The prospective evaluation of a nested polymerase chain reaction assay for the early detection of Aspergillus infection in patients with leukaemia or undergoing allograft treatment
Ferns, R. Bridget, Fletcher, Helen, Bradley, Susan, Mackinnon, Stephen, Hunt, Chris, Tedder, Richard S.
Published in British journal of haematology (01.12.2002)
Published in British journal of haematology (01.12.2002)
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Journal Article
Minor groove binder modification of widely used TaqMan hydrolysis probe for detection of dengue virus reduces risk of false-negative real-time PCR results for serotype 4
Gray, Eleanor R., Heaney, Judith, Ferns, R. Bridget, Sequeira, Patricia C., Nastouli, Eleni, Garson, Jeremy A.
Published in Journal of virological methods (01.06.2019)
Published in Journal of virological methods (01.06.2019)
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Nosocomial transmission of influenza: A retrospective cross‐sectional study using next generation sequencing at a hospital in England (2012‐2014)
Blackburn, Ruth M., Frampton, Dan, Smith, Catherine M., Fragaszy, Ellen B., Watson, Simon J., Ferns, R. Bridget, Binter, Špela, Coen, Pietro G., Grant, Paul, Shallcross, Laura J., Kozlakidis, Zisis, Pillay, Deenan, Kellam, Paul, Hué, Stéphane, Nastouli, Eleni, Hayward, Andrew C., Kinghorn, Jane, Wurie, Fatima, Rahman, Saadia, Johnson, Anne, Dunn, David, Leigh‐Brown, Andrew, Morris, Steven, Irving, William, Clark, Duncan, Zambon, Maria
Published in Influenza and other respiratory viruses (01.11.2019)
Published in Influenza and other respiratory viruses (01.11.2019)
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Ultra-deep sequencing provides insights into the virology of hepatitis C super-infections in a case of three sequential infections with different genotypes
Chung, Emily, Ferns, R. Bridget, He, Miao, Rigatti, Roberto, Grant, Paul, McCormick, Adele, Bhagani, Sanjay, Webster, Daniel Peter, Nastouli, Eleni, Waters, Laura Jane
Published in Journal of clinical virology (01.09.2015)
Published in Journal of clinical virology (01.09.2015)
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Journal Article
Proof-of-Principle for Immune Control of Global HIV-1 Reactivation In Vivo
Smith, Nicola M. G., MIcochova, Petra, Watters, Sarah A., Aasa-Chapman, Marlene M. I., Rabin, Neil, Moore, Sally, Edwards, Simon G., Garson, Jeremy A., Grant, Paul R., Ferns, R. Bridget, Kashuba, Angela, Mayor, Neema P., Schellekens, Jennifer, Marsh, Steven G. E., McMichael, Andrew J., Perelson, Alan S., Pillay, Deenan, Goonetilleke, Nilu, Gupta, Ravindra K.
Published in Clinical infectious diseases (01.07.2015)
Published in Clinical infectious diseases (01.07.2015)
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