Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process
Richard, Angélique, Boullu, Loïs, Herbach, Ulysse, Bonnafoux, Arnaud, Morin, Valérie, Vallin, Elodie, Guillemin, Anissa, Papili Gao, Nan, Gunawan, Rudiyanto, Cosette, Jérémie, Arnaud, Ophélie, Kupiec, Jean-Jacques, Espinasse, Thibault, Gonin-Giraud, Sandrine, Gandrillon, Olivier
Published in PLoS biology (27.12.2016)
Published in PLoS biology (27.12.2016)
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Journal Article
Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty
Ventre, Elias, Espinasse, Thibault, Bréhier, Charles-Edouard, Calvez, Vincent, Lepoutre, Thomas, Gandrillon, Olivier
Published in Journal of mathematical biology (01.11.2021)
Published in Journal of mathematical biology (01.11.2021)
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One model fits all: Combining inference and simulation of gene regulatory networks
Ventre, Elias, Herbach, Ulysse, Espinasse, Thibault, Benoit, Gérard, Gandrillon, Olivier
Published in PLoS computational biology (27.03.2023)
Published in PLoS computational biology (27.03.2023)
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Journal Article
Hematopoietic differentiation is characterized by a transient peak of entropy at a single-cell level
Dussiau, Charles, Boussaroque, Agathe, Gaillard, Mathilde, Bravetti, Clotilde, Zaroili, Laila, Knosp, Camille, Friedrich, Chloé, Asquier, Philippe, Willems, Lise, Quint, Laurent, Bouscary, Didier, Fontenay, Michaela, Espinasse, Thibault, Plesa, Adriana, Sujobert, Pierre, Gandrillon, Olivier, Kosmider, Olivier
Published in BMC biology (09.03.2022)
Published in BMC biology (09.03.2022)
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Journal Article
A Probabilistic Graph Coupling View of Dimension Reduction
Hugues Van Assel, Thibault Espinasse, Chiquet, Julien, Picard, Franck
Published in arXiv.org (05.10.2023)
Published in arXiv.org (05.10.2023)
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Inferring gene regulatory networks from single-cell data: a mechanistic approach
Herbach, Ulysse, Bonnaffoux, Arnaud, Espinasse, Thibault, Gandrillon, Olivier
Published in BMC systems biology (21.11.2017)
Published in BMC systems biology (21.11.2017)
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Relations between connected and self-avoiding walks in a digraph
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Inferring gene regulatory networks from single-cell data: a mechanistic approach
Ulysse Herbach, Bonnaffoux, Arnaud, Thibault Espinasse, Gandrillon, Olivier
Published in arXiv.org (25.11.2017)
Published in arXiv.org (25.11.2017)
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Journal Article
A combinatorial approach to a model of constrained random walkers
Thibault Espinasse, Guillotin-Plantard, Nadine, Nadeau, Philippe
Published in arXiv.org (23.02.2014)
Published in arXiv.org (23.02.2014)
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Corrigendum to: Entropy as a measure of variability and stemness in single-cell transcriptomics
Gandrillon, Olivier, Gaillard, Mathilde, Espinasse, Thibault, Garnier, Nicolas B., Dussiaud, Charles, Kosmider, Olivier, Sujobert, Pierre
Published in Current opinion in systems biology (01.09.2023)
Published in Current opinion in systems biology (01.09.2023)
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Diffusivity of a random walk on random walks
Boissard, Emmanuel, Cohen, Serge, Thibault Espinasse, Norris, James
Published in arXiv.org (17.10.2012)
Published in arXiv.org (17.10.2012)
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Diffusivity of a random walk on random walks
Boissard, Emmanuel, Cohen, Serge, Espinasse, Thibault, Norris, James
Published in Random structures & algorithms (01.09.2015)
Published in Random structures & algorithms (01.09.2015)
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Entropy as a measure of variability and stemness in single-cell transcriptomics
Gandrillon, Olivier, Gaillard, Mathilde, Espinasse, Thibault, Garnier, Nicolas B., Dussiau, Charles, Kosmider, Olivier, Sujobert, Pierre
Published in Current opinion in systems biology (01.09.2021)
Published in Current opinion in systems biology (01.09.2021)
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