Pig genome functional annotation enhances the biological interpretation of complex traits and human disease
Pan, Zhangyuan, Yao, Yuelin, Yin, Hongwei, Cai, Zexi, Wang, Ying, Bai, Lijing, Kern, Colin, Halstead, Michelle, Chanthavixay, Ganrea, Trakooljul, Nares, Wimmers, Klaus, Sahana, Goutam, Su, Guosheng, Lund, Mogens Sandø, Fredholm, Merete, Karlskov-Mortensen, Peter, Ernst, Catherine W., Ross, Pablo, Tuggle, Christopher K., Fang, Lingzhao, Zhou, Huaijun
Published in Nature communications (06.10.2021)
Published in Nature communications (06.10.2021)
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Journal Article
Estimation of linkage disequilibrium in four US pig breeds
Badke, Yvonne M, Bates, Ronald O, Ernst, Catherine W, Schwab, Clint, Steibel, Juan P
Published in BMC genomics (17.01.2012)
Published in BMC genomics (17.01.2012)
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Mapping splice QTLs reveals distinct transcriptional and post-transcriptional regulatory variation of gene expression and identifies putative alternative splicing variation mediating complex trait variation in pigs
Zhang, Fei, Velez-Irizarry, Deborah, Ernst, Catherine W, Huang, Wen
Published in BMC genomics (05.05.2023)
Published in BMC genomics (05.05.2023)
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Journal Article
A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues
Halstead, Michelle M, Kern, Colin, Saelao, Perot, Wang, Ying, Chanthavixay, Ganrea, Medrano, Juan F, Van Eenennaam, Alison L, Korf, Ian, Tuggle, Christopher K, Ernst, Catherine W, Zhou, Huaijun, Ross, Pablo J
Published in BMC genomics (07.10.2020)
Published in BMC genomics (07.10.2020)
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Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research
Kern, Colin, Wang, Ying, Xu, Xiaoqin, Pan, Zhangyuan, Halstead, Michelle, Chanthavixay, Ganrea, Saelao, Perot, Waters, Susan, Xiang, Ruidong, Chamberlain, Amanda, Korf, Ian, Delany, Mary E., Cheng, Hans H., Medrano, Juan F., Van Eenennaam, Alison L., Tuggle, Chris K., Ernst, Catherine, Flicek, Paul, Quon, Gerald, Ross, Pablo, Zhou, Huaijun
Published in Nature communications (23.03.2021)
Published in Nature communications (23.03.2021)
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Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species
Kern, Colin, Wang, Ying, Chitwood, James, Korf, Ian, Delany, Mary, Cheng, Hans, Medrano, Juan F, Van Eenennaam, Alison L, Ernst, Catherine, Ross, Pablo, Zhou, Huaijun
Published in BMC genomics (18.09.2018)
Published in BMC genomics (18.09.2018)
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Journal Article
Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs
Velez-Irizarry, Deborah, Casiro, Sebastian, Daza, Kaitlyn R, Bates, Ronald O, Raney, Nancy E, Steibel, Juan P, Ernst, Catherine W
Published in BMC genomics (03.01.2019)
Published in BMC genomics (03.01.2019)
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Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits
Corbett, Ryan J, Luttman, Andrea M, Herrera-Uribe, Juber, Liu, Haibo, Raney, Nancy E, Grabowski, Jenna M, Loving, Crystal L, Tuggle, Christopher K, Ernst, Catherine W
Published in BMC genomics (11.08.2022)
Published in BMC genomics (11.08.2022)
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Journal Article
Deciphering Sex-Specific Genetic Architectures Using Local Bayesian Regressions
Funkhouser, Scott A, Vazquez, Ana I, Steibel, Juan P, Ernst, Catherine W, los Campos, Gustavo de
Published in Genetics (Austin) (01.05.2020)
Published in Genetics (Austin) (01.05.2020)
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Journal Article
Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements
Funkhouser, Scott A, Steibel, Juan P, Bates, Ronald O, Raney, Nancy E, Schenk, Darius, Ernst, Catherine W
Published in BMC genomics (09.05.2017)
Published in BMC genomics (09.05.2017)
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Estimation of direct and social effects of feeding duration in growing pigs using records from automatic feeding stations
Angarita, Belcy K, Han, Junjie, Cantet, Rodolfo J C, Chewning, Sarah K, Wurtz, Kaitlin E, Siegford, Janice M, Ernst, Catherine W, Steibel, Juan Pedro
Published in Journal of animal science (01.05.2021)
Published in Journal of animal science (01.05.2021)
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Journal Article
The Social Life of Pigs: Changes in Affiliative and Agonistic Behaviors following Mixing
O'Malley, Carly I, Steibel, Juan P, Bates, Ronald O, Ernst, Catherine W, Siegford, Janice M
Published in Animals (Basel) (16.01.2022)
Published in Animals (Basel) (16.01.2022)
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Evaluation of housekeeping genes for normalizing real-time quantitative PCR assays in pig skeletal muscle at multiple developmental stages
Wang, Yueying, Zhao, Yuqiang, Li, Ji, Liu, Huijing, Ernst, Catherine W., Liu, Xiaoran, Liu, Guorong, Xi, Yu, Lei, Minggang
Published in Gene (10.07.2015)
Published in Gene (10.07.2015)
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Time budgets of group-housed pigs in relation to social aggression and production
O′Malley, Carly I, Steibel, Juan P, Bates, Ronald O, Ernst, Catherine W, Siegford, Janice M
Published in Journal of animal science (01.05.2021)
Published in Journal of animal science (01.05.2021)
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Journal Article
Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology
Li, Jinghui, Guan, Dailu, Halstead, Michelle M., Islas‐Trejo, Alma D., Goszczynski, Daniel E., Ernst, Catherine W., Cheng, Hao, Ross, Pablo, Zhou, Huaijun
Published in Animal genetics (01.02.2023)
Published in Animal genetics (01.02.2023)
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Journal Article
Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle
Daza, Kaitlyn R, Velez-Irizarry, Deborah, Casiró, Sebastian, Steibel, Juan P, Raney, Nancy E, Bates, Ronald O, Ernst, Catherine W
Published in Frontiers in genetics (30.03.2021)
Published in Frontiers in genetics (30.03.2021)
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