Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming
Tiwari, Neha, Tiwari, Vijay K., Waldmeier, Lorenz, Balwierz, Piotr J., Arnold, Phil, Pachkov, Mikhail, Meyer-Schaller, Nathalie, Schübeler, Dirk, van Nimwegen, Erik, Christofori, Gerhard
Published in Cancer cell (10.06.2013)
Published in Cancer cell (10.06.2013)
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DNA-binding factors shape the mouse methylome at distal regulatory regions
Stadler, Michael B., Murr, Rabih, Burger, Lukas, Ivanek, Robert, Lienert, Florian, Schöler, Anne, Nimwegen, Erik van, Wirbelauer, Christiane, Oakeley, Edward J., Gaidatzis, Dimos, Tiwari, Vijay K., Schübeler, Dirk
Published in Nature (London) (22.12.2011)
Published in Nature (London) (22.12.2011)
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Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network
Urchueguía, Arantxa, Galbusera, Luca, Chauvin, Dany, Bellement, Gwendoline, Julou, Thomas, van Nimwegen, Erik
Published in PLoS biology (17.12.2021)
Published in PLoS biology (17.12.2021)
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Inference of miRNA targets using evolutionary conservation and pathway analysis
Gaidatzis, Dimos, van Nimwegen, Erik, Hausser, Jean, Zavolan, Mihaela
Published in BMC bioinformatics (01.03.2007)
Published in BMC bioinformatics (01.03.2007)
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Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop
Aceto, Nicola, Sausgruber, Nina, Brinkhaus, Heike, Gaidatzis, Dimos, Martiny-Baron, Georg, Mazzarol, Giovanni, Confalonieri, Stefano, Quarto, Micaela, Hu, Guang, Balwierz, Piotr J, Pachkov, Mikhail, Elledge, Stephen J, van Nimwegen, Erik, Stadler, Michael B, Bentires-Alj, Mohamed
Published in Nature medicine (01.04.2012)
Published in Nature medicine (01.04.2012)
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Adipose Tissue MicroRNAs as Regulators of CCL2 Production in Human Obesity
ARNER, Erik, MEJHERT, Niklas, DAHLMAN-WRIGHT, Karin, TANTI, Jean-François, HAYASHIZAKI, Yoshihide, RYDEN, Mikael, DAHLMAN, Ingrid, NIMWEGEN, Erik Van, DAUB, Carsten O, ARNER, Peter, KULYTE, Agne, BALWIERZ, Piotr J, PACHKOV, Mikhail, CORMONT, Mireille, LORENTE-CEBRIAN, Silvia, EHRLUND, Anna, LAURENCIKIENE, Jurga, HEDEN, Per
Published in Diabetes (New York, N.Y.) (01.08.2012)
Published in Diabetes (New York, N.Y.) (01.08.2012)
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PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny
Siddharthan, Rahul, Siggia, Eric D, van Nimwegen, Erik
Published in PLoS computational biology (01.12.2005)
Published in PLoS computational biology (01.12.2005)
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The Corepressor NCoR1 Antagonizes PGC-1α and Estrogen-Related Receptor α in the Regulation of Skeletal Muscle Function and Oxidative Metabolism
Pérez-Schindler, Joaquín, Summermatter, Serge, Salatino, Silvia, Zorzato, Francesco, Beer, Markus, Balwierz, Piotr J., van Nimwegen, Erik, Feige, Jérôme N., Auwerx, Johan, Handschin, Christoph
Published in Molecular and Cellular Biology (01.12.2012)
Published in Molecular and Cellular Biology (01.12.2012)
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Identification of clustered microRNAs using an ab initio prediction method
Sewer, Alain, Paul, Nicodème, Landgraf, Pablo, Aravin, Alexei, Pfeffer, Sébastien, Brownstein, Michael J, Tuschl, Thomas, van Nimwegen, Erik, Zavolan, Mihaela
Published in BMC bioinformatics (07.11.2005)
Published in BMC bioinformatics (07.11.2005)
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Identifying cell states in single-cell RNA-seq data at statistically maximal resolution
Grobecker, Pascal, Sakoparnig, Thomas, van Nimwegen, Erik
Published in PLoS computational biology (12.07.2024)
Published in PLoS computational biology (12.07.2024)
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Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads
Bertels, Frederic, Silander, Olin K., Pachkov, Mikhail, Rainey, Paul B., van Nimwegen, Erik
Published in Molecular biology and evolution (01.05.2014)
Published in Molecular biology and evolution (01.05.2014)
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Tead2 expression levels control the subcellular distribution of Yap and Taz, zyxin expression and epithelial-mesenchymal transition
Diepenbruck, Maren, Waldmeier, Lorenz, Ivanek, Robert, Berninger, Philipp, Arnold, Phil, van Nimwegen, Erik, Christofori, Gerhard
Published in Journal of cell science (01.04.2014)
Published in Journal of cell science (01.04.2014)
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ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
Balwierz, Piotr J, Pachkov, Mikhail, Arnold, Phil, Gruber, Andreas J, Zavolan, Mihaela, van Nimwegen, Erik
Published in Genome research (01.05.2014)
Published in Genome research (01.05.2014)
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