Deep learning allows genome-scale prediction of Michaelis constants from structural features
Kroll, Alexander, Engqvist, Martin K M, Heckmann, David, Lercher, Martin J
Published in PLoS biology (19.10.2021)
Published in PLoS biology (19.10.2021)
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A general model to predict small molecule substrates of enzymes based on machine and deep learning
Kroll, Alexander, Ranjan, Sahasra, Engqvist, Martin K M, Lercher, Martin J
Published in Nature communications (15.05.2023)
Published in Nature communications (15.05.2023)
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Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima
Li, Gang, Rabe, Kersten S, Nielsen, Jens, Engqvist, Martin K. M
Published in ACS synthetic biology (21.06.2019)
Published in ACS synthetic biology (21.06.2019)
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Nucleotide pools dictate the identity and frequency of ribonucleotide incorporation in mitochondrial DNA
Berglund, Anna-Karin, Navarrete, Clara, Engqvist, Martin K M, Hoberg, Emily, Szilagyi, Zsolt, Taylor, Robert W, Gustafsson, Claes M, Falkenberg, Maria, Clausen, Anders R
Published in PLoS genetics (16.02.2017)
Published in PLoS genetics (16.02.2017)
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Different Routes of Protein Folding Contribute to Improved Protein Production in Saccharomyces cerevisiae
Qi, Qi, Li, Feiran, Yu, Rosemary, Engqvist, Martin K M, Siewers, Verena, Fuchs, Johannes, Nielsen, Jens
Published in mBio (10.11.2020)
Published in mBio (10.11.2020)
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Engineering Saccharomyces cerevisiae for the production and secretion of Affibody molecules
Gast, Veronica, Sandegren, Anna, Dunås, Finn, Ekblad, Siri, Güler, Rezan, Thorén, Staffan, Tous Mohedano, Marta, Molin, Mikael, Engqvist, Martin K M, Siewers, Verena
Published in Microbial cell factories (09.03.2022)
Published in Microbial cell factories (09.03.2022)
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Directed evolution of a far-red fluorescent rhodopsin
McIsaac, R. Scott, Engqvist, Martin K. M., Wannier, Timothy, Rosenthal, Adam Z., Herwig, Lukas, Flytzanis, Nicholas C., Imasheva, Eleonora S., Lanyi, Janos K., Balashov, Sergei P., Gradinaru, Viviana, Arnold, Frances H.
Published in Proceedings of the National Academy of Sciences - PNAS (09.09.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (09.09.2014)
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A synthesis of bacterial and archaeal phenotypic trait data
Madin, Joshua S, Nielsen, Daniel A, Brbic, Maria, Corkrey, Ross, Danko, David, Edwards, Kyle, Engqvist, Martin K M, Fierer, Noah, Geoghegan, Jemma L, Gillings, Michael, Kyrpides, Nikos C, Litchman, Elena, Mason, Christopher E, Moore, Lisa, Nielsen, Søren L, Paulsen, Ian T, Price, Nathan D, Reddy, T B K, Richards, Matthew A, Rocha, Eduardo P C, Schmidt, Thomas M, Shaaban, Heba, Shukla, Maulik, Supek, Fran, Tetu, Sasha G, Vieira-Silva, Sara, Wattam, Alice R, Westfall, David A, Westoby, Mark
Published in Scientific data (05.06.2020)
Published in Scientific data (05.06.2020)
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Biochemical control systems for small molecule damage in plants
Hüdig, M., Schmitz, J., Engqvist, M. K. M., Maurino, V. G.
Published in Plant signaling & behavior (01.01.2018)
Published in Plant signaling & behavior (01.01.2018)
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D-2-hydroxyglutarate metabolism is linked to photorespiration in the shm1-1 mutant
Kuhn, A., Engqvist, M. K. M., Jansen, E. E. W., Weber, A. P. M., Jakobs, C., Maurino, V. G.
Published in Plant biology (Stuttgart, Germany) (01.07.2013)
Published in Plant biology (Stuttgart, Germany) (01.07.2013)
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Dataset for suppressors of amyloid-β toxicity and their functions in recombinant protein production in yeast
Chen, Xin, Li, Xiaowei, Ji, Boyang, Wang, Yanyan, Ishchuk, Olena P., Vorontsov, Egor, Petranovic, Dina, Siewers, Verena, Engqvist, Martin K.M.
Published in Data in brief (01.06.2022)
Published in Data in brief (01.06.2022)
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Suppressors of amyloid-β toxicity improve recombinant protein production in yeast by reducing oxidative stress and tuning cellular metabolism
Chen, Xin, Li, Xiaowei, Ji, Boyang, Wang, Yanyan, Ishchuk, Olena P., Vorontsov, Egor, Petranovic, Dina, Siewers, Verena, Engqvist, Martin K.M.
Published in Metabolic engineering (01.07.2022)
Published in Metabolic engineering (01.07.2022)
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The influence of alternative pathways of respiration that utilize branched‐chain amino acids following water shortage in Arabidopsis
Pires, Marcel V., Pereira Júnior, Adilson A., Medeiros, David B., Daloso, Danilo M., Pham, Phuong Anh, Barros, Kallyne A., Engqvist, Martin K. M., Florian, Alexandra, Krahnert, Ina, Maurino, Veronica G., Araújo, Wagner L., Fernie, Alisdair R.
Published in Plant, cell and environment (01.06.2016)
Published in Plant, cell and environment (01.06.2016)
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CAZyme prediction in ascomycetous yeast genomes guides discovery of novel xylanolytic species with diverse capacities for hemicellulose hydrolysis
Ravn, Jonas L, Engqvist, Martin K. M, Larsbrink, Johan, Geijer, Cecilia
Published in Biotechnology for biofuels (02.07.2021)
Published in Biotechnology for biofuels (02.07.2021)
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Journal Article
Comparison of rapeseed cultivars and resynthesized lines based on allozyme and RFLP markers
Becker, H.C, Engqvist, G.M, Karlsson, B. (Swedish Univ. of Agricultural Sciences, Svaloev (Sweden). Dept. of Plant Breeding Research)
Published in Theoretical and applied genetics (01.07.1995)
Published in Theoretical and applied genetics (01.07.1995)
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