Transposition favors the generation of large effect mutations that may facilitate rapid adaption
Quadrana, Leandro, Etcheverry, Mathilde, Gilly, Arthur, Caillieux, Erwann, Madoui, Mohammed-Amin, Guy, Julie, Bortolini Silveira, Amanda, Engelen, Stefan, Baillet, Victoire, Wincker, Patrick, Aury, Jean-Marc, Colot, Vincent
Published in Nature communications (31.07.2019)
Published in Nature communications (31.07.2019)
Get full text
Journal Article
Convergent genomic signatures of domestication in sheep and goats
Alberto, Florian J., Boyer, Frédéric, Orozco-terWengel, Pablo, Streeter, Ian, Servin, Bertrand, de Villemereuil, Pierre, Benjelloun, Badr, Librado, Pablo, Biscarini, Filippo, Colli, Licia, Barbato, Mario, Zamani, Wahid, Alberti, Adriana, Engelen, Stefan, Stella, Alessandra, Joost, Stéphane, Ajmone-Marsan, Paolo, Negrini, Riccardo, Orlando, Ludovic, Rezaei, Hamid Reza, Naderi, Saeid, Clarke, Laura, Flicek, Paul, Wincker, Patrick, Coissac, Eric, Kijas, James, Tosser-Klopp, Gwenola, Chikhi, Abdelkader, Bruford, Michael W., Taberlet, Pierre, Pompanon, François
Published in Nature communications (06.03.2018)
Published in Nature communications (06.03.2018)
Get full text
Journal Article
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
Vallenet, David, Belda, Eugeni, Calteau, Alexandra, Cruveiller, Stéphane, Engelen, Stefan, Lajus, Aurélie, Le Fèvre, François, Longin, Cyrille, Mornico, Damien, Roche, David, Rouy, Zoé, Salvignol, Gregory, Scarpelli, Claude, Thil Smith, Adam Alexander, Weiman, Marion, Médigue, Claudine
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
Get full text
Journal Article
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc
Published in Nature plants (01.11.2018)
Published in Nature plants (01.11.2018)
Get full text
Journal Article
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
Cubry, Philippe, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline, Monat, Cécile, Ndjiondjop, Marie-Noelle, Labadie, Karine, Cruaud, Corinne, Engelen, Stefan, Scarcelli, Nora, Rhoné, Bénédicte, Burgarella, Concetta, Dupuy, Christian, Larmande, Pierre, Wincker, Patrick, François, Olivier, Sabot, François, Vigouroux, Yves
Published in Current biology (23.07.2018)
Published in Current biology (23.07.2018)
Get full text
Journal Article
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Hennion, Magali, Arbona, Jean-Michel, Lacroix, Laurent, Cruaud, Corinne, Theulot, Bertrand, Tallec, Benoît Le, Proux, Florence, Wu, Xia, Novikova, Elizaveta, Engelen, Stefan, Lemainque, Arnaud, Audit, Benjamin, Hyrien, Olivier
Published in Genome Biology (26.05.2020)
Published in Genome Biology (26.05.2020)
Get full text
Journal Article
Genome-wide mapping of individual replication fork velocities using nanopore sequencing
Theulot, Bertrand, Lacroix, Laurent, Arbona, Jean-Michel, Millot, Gael A., Jean, Etienne, Cruaud, Corinne, Pellet, Jade, Proux, Florence, Hennion, Magali, Engelen, Stefan, Lemainque, Arnaud, Audit, Benjamin, Hyrien, Olivier, Le Tallec, Benoît
Published in Nature communications (08.06.2022)
Published in Nature communications (08.06.2022)
Get full text
Journal Article
Long-read assembly of the Brassica napus reference genome Darmor-bzh
Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc
Published in Gigascience (15.12.2020)
Published in Gigascience (15.12.2020)
Get full text
Journal Article
Author Correction: A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Carradec, Quentin, Poulain, Julie, Boissin, Emilie, Hume, Benjamin C. C., Voolstra, Christian R., Ziegler, Maren, Engelen, Stefan, Cruaud, Corinne, Planes, Serge, Wincker, Patrick
Published in Scientific reports (18.01.2021)
Published in Scientific reports (18.01.2021)
Get full text
Journal Article
Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC
Engelen, Stefan, Vallenet, David, Médigue, Claudine, Danchin, Antoine
Published in BMC genomics (14.02.2012)
Published in BMC genomics (14.02.2012)
Get full text
Journal Article
DuplicationDetector, a light weight tool for duplication detection using NGS data
Djedatin, Gustave, Monat, Cécile, Engelen, Stefan, Sabot, Francois
Published in Current plant biology (01.06.2017)
Published in Current plant biology (01.06.2017)
Get full text
Journal Article
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
Peter, Jackson, De Chiara, Matteo, Friedrich, Anne, Yue, Jia-Xing, Pflieger, David, Bergström, Anders, Sigwalt, Anastasie, Barre, Benjamin, Freel, Kelle, Llored, Agnès, Cruaud, Corinne, Labadie, Karine, Aury, Jean-Marc, Istace, Benjamin, Lebrigand, Kevin, Barbry, Pascal, Engelen, Stefan, Lemainque, Arnaud, Wincker, Patrick, Liti, Gianni, Schacherer, Joseph
Published in Nature (London) (01.04.2018)
Published in Nature (London) (01.04.2018)
Get full text
Journal Article
Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
Alberti, Adriana, Belser, Caroline, Engelen, Stéfan, Bertrand, Laurie, Orvain, Céline, Brinas, Laura, Cruaud, Corinne, Giraut, Laurène, Da Silva, Corinne, Firmo, Cyril, Aury, Jean-Marc, Wincker, Patrick
Published in BMC genomics (20.10.2014)
Published in BMC genomics (20.10.2014)
Get full text
Journal Article
VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
Denoyelle, Laure, Talouarn, Estelle, Bardou, Philippe, Colli, Licia, Alberti, Adriana, Danchin, Coralie, Del Corvo, Marcello, Engelen, Stéfan, Orvain, Céline, Palhière, Isabelle, Rupp, Rachel, Sarry, Julien, Salavati, Mazdak, Amills, Marcel, Clark, Emily, Crepaldi, Paola, Faraut, Thomas, Masiga, Clet Wandui, Pompanon, François, Rosen, Benjamin D, Stella, Alessandra, Van Tassell, Curtis P, Tosser-Klopp, Gwenola, Kijas, James, Guldbrandtsen, Bernt, Kantanen, Juha, Duby, Dylan, Martin, Pierre, Duclos, Delphine, Allain, Daniel, Arquet, Rémy, Mandonnet, Nathalie, Naves, Michel, breeders, CABRICOOP, Rezaei, Hamid R, Carolan, Sean, Foran, Maeve, Ajmone-Marsan, Paolo, Crisà, Alessandra, Marletta, Donata, Ottino, Michele, Randi, Ettore, Benjelloun, Badr, Lenstra, Hans, Moaeen-ud-Din, Muhammad, Reecy, Jim, Goyache, Felix, Alvarez, Isabel, Sànchez, Armand, Capote, Juan, Jordana, Jordi, Pons, Agueda, Martínez, Amparo, Molina, Antonio, Rosen, Benjamin, Visser, Carina, Drögemüller, Cord, Luikart, Gordon, Mujibi, Denis Fidalis, Mruttu, Hassan Ally, Gondwe, Timothy, Sikosana, Joseph, Da Gloria, Maria Taela, Nash, Oyekan
Published in Genetics selection evolution (Paris) (08.11.2021)
Published in Genetics selection evolution (Paris) (08.11.2021)
Get full text
Journal Article
Genome assembly using Nanopore-guided long and error-free DNA reads
Madoui, Mohammed-Amin, Engelen, Stefan, Cruaud, Corinne, Belser, Caroline, Bertrand, Laurie, Alberti, Adriana, Lemainque, Arnaud, Wincker, Patrick, Aury, Jean-Marc
Published in BMC genomics (20.04.2015)
Published in BMC genomics (20.04.2015)
Get full text
Journal Article