Comet: An open-source MS/MS sequence database search tool
Eng, Jimmy K., Jahan, Tahmina A., Hoopmann, Michael R.
Published in Proteomics (Weinheim) (01.01.2013)
Published in Proteomics (Weinheim) (01.01.2013)
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Journal Article
Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics
Schweppe, Devin K, Eng, Jimmy K, Yu, Qing, Bailey, Derek, Rad, Ramin, Navarrete-Perea, Jose, Huttlin, Edward L, Erickson, Brian K, Paulo, Joao A, Gygi, Steven P
Published in Journal of proteome research (01.05.2020)
Published in Journal of proteome research (01.05.2020)
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Journal Article
iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
Shteynberg, David, Deutsch, Eric W., Lam, Henry, Eng, Jimmy K., Sun, Zhi, Tasman, Natalie, Mendoza, Luis, Moritz, Robert L., Aebersold, Ruedi, Nesvizhskii, Alexey I.
Published in Molecular & cellular proteomics (01.12.2011)
Published in Molecular & cellular proteomics (01.12.2011)
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Journal Article
In Vivo Conformational Dynamics of Hsp90 and Its Interactors
Chavez, Juan D., Schweppe, Devin K., Eng, Jimmy K., Bruce, James E.
Published in Cell chemical biology (23.06.2016)
Published in Cell chemical biology (23.06.2016)
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Journal Article
guided tour of the Trans-Proteomic Pipeline
Deutsch, Eric W, Mendoza, Luis, Shteynberg, David, Farrah, Terry, Lam, Henry, Tasman, Natalie, Sun, Zhi, Nilsson, Erik, Pratt, Brian, Prazen, Bryan, Eng, Jimmy K, Martin, Daniel B, Nesvizhskii, Alexey I, Aebersold, Ruedi
Published in Proteomics (Weinheim) (01.03.2010)
Published in Proteomics (Weinheim) (01.03.2010)
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Journal Article
A Face in the Crowd: Recognizing Peptides Through Database Search
Eng, Jimmy K., Searle, Brian C., Clauser, Karl R., Tabb, David L.
Published in Molecular & cellular proteomics (01.11.2011)
Published in Molecular & cellular proteomics (01.11.2011)
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Journal Article
A Fast SEQUEST Cross Correlation Algorithm
Eng, Jimmy K, Fischer, Bernd, Grossmann, Jonas, MacCoss, Michael J
Published in Journal of proteome research (01.10.2008)
Published in Journal of proteome research (01.10.2008)
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Journal Article
Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins
Ting, See-Yeun, Bosch, Dustin E., Mangiameli, Sarah M., Radey, Matthew C., Huang, Shuo, Park, Young-Jun, Kelly, Katherine A., Filip, Szymon Krzysztof, Goo, Young Ah, Eng, Jimmy K., Allaire, Marc, Veesler, David, Wiggins, Paul A., Peterson, S. Brook, Mougous, Joseph D.
Published in Cell (15.11.2018)
Published in Cell (15.11.2018)
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Journal Article
Probing the Protein Interaction Network of Pseudomonas aeruginosa Cells by Chemical Cross-Linking Mass Spectrometry
Navare, Arti T., Chavez, Juan D., Zheng, Chunxiang, Weisbrod, Chad R., Eng, Jimmy K., Siehnel, Richard, Singh, Pradeep K., Manoil, Colin, Bruce, James E.
Published in Structure (London) (07.04.2015)
Published in Structure (London) (07.04.2015)
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Journal Article
A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry
Chavez, Juan D, Eng, Jimmy K, Schweppe, Devin K, Cilia, Michelle, Rivera, Keith, Zhong, Xuefei, Wu, Xia, Allen, Terrence, Khurgel, Moshe, Kumar, Akhilesh, Lampropoulos, Athanasios, Larsson, Mårten, Maity, Shuvadeep, Morozov, Yaroslav, Pathmasiri, Wimal, Perez-Neut, Mathew, Pineyro-Ruiz, Coriness, Polina, Elizabeth, Post, Stephanie, Rider, Mark, Tokmina-Roszyk, Dorota, Tyson, Katherine, Vieira Parrine Sant'Ana, Debora, Bruce, James E
Published in PloS one (20.12.2016)
Published in PloS one (20.12.2016)
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Journal Article
Protein Interactions, Post-translational Modifications and Topologies in Human Cells
Chavez, Juan D., Weisbrod, Chad R., Zheng, Chunxiang, Eng, Jimmy K., Bruce, James E.
Published in Molecular & cellular proteomics (01.05.2013)
Published in Molecular & cellular proteomics (01.05.2013)
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Journal Article
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions
Mayya, Viveka, Lundgren, Deborah H, Hwang, Sun-Il, Rezaul, Karim, Wu, Linfeng, Eng, Jimmy K, Rodionov, Vladimir, Han, David K
Published in Science signaling (18.08.2009)
Published in Science signaling (18.08.2009)
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Journal Article
Building consensus spectral libraries for peptide identification in proteomics
Lam, Henry, Deutsch, Eric W, Eddes, James S, Eng, Jimmy K, Stein, Stephen E, Aebersold, Ruedi
Published in Nature methods (01.10.2008)
Published in Nature methods (01.10.2008)
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Journal Article
General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
MacLean, Brendan, Eng, Jimmy K., Beavis, Ronald C., McIntosh, Martin
Published in Bioinformatics (15.11.2006)
Published in Bioinformatics (15.11.2006)
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Journal Article