Gut-microbiota-targeted diets modulate human immune status
Wastyk, Hannah C., Fragiadakis, Gabriela K., Perelman, Dalia, Dahan, Dylan, Merrill, Bryan D., Yu, Feiqiao B., Topf, Madeline, Gonzalez, Carlos G., Van Treuren, William, Han, Shuo, Robinson, Jennifer L., Elias, Joshua E., Sonnenburg, Erica D., Gardner, Christopher D., Sonnenburg, Justin L.
Published in Cell (05.08.2021)
Published in Cell (05.08.2021)
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Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
Smits, Samuel A., Leach, Jeff, Sonnenburg, Erica D., Gonzalez, Carlos G., Lichtman, Joshua S., Reid, Gregor, Knight, Rob, Manjurano, Alphaxard, Changalucha, John, Elias, Joshua E., Dominguez-Bello, Maria Gloria, Sonnenburg, Justin L.
Published in Science (American Association for the Advancement of Science) (25.08.2017)
Published in Science (American Association for the Advancement of Science) (25.08.2017)
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Journal Article
Quantitative Imaging of Gut Microbiota Spatial Organization
Earle, Kristen A., Billings, Gabriel, Sigal, Michael, Lichtman, Joshua S., Hansson, Gunnar C., Elias, Joshua E., Amieva, Manuel R., Huang, Kerwyn Casey, Sonnenburg, Justin L.
Published in Cell host & microbe (14.10.2015)
Published in Cell host & microbe (14.10.2015)
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Journal Article
Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens
Marceau, Caleb D, Puschnik, Andreas S, Majzoub, Karim, Ooi, Yaw Shin, Brewer, Susan M, Fuchs, Gabriele, Swaminathan, Kavya, Mata, Miguel A, Elias, Joshua E, Sarnow, Peter, Carette, Jan E
Published in Nature (London) (07.07.2016)
Published in Nature (London) (07.07.2016)
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Journal Article
Predicting HLA class II antigen presentation through integrated deep learning
Chen, Binbin, Khodadoust, Michael S, Olsson, Niclas, Wagar, Lisa E, Fast, Ethan, Liu, Chih Long, Muftuoglu, Yagmur, Sworder, Brian J, Diehn, Maximilian, Levy, Ronald, Davis, Mark M, Elias, Joshua E, Altman, Russ B, Alizadeh, Ash A
Published in Nature biotechnology (01.11.2019)
Published in Nature biotechnology (01.11.2019)
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Target-decoy search strategy for mass spectrometry-based proteomics
Elias, Joshua E, Gygi, Steven P
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2010)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2010)
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Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites
Boucher, Michael J, Ghosh, Sreejoyee, Zhang, Lichao, Lal, Avantika, Jang, Se Won, Ju, An, Zhang, Shuying, Wang, Xinzi, Ralph, Stuart A, Zou, James, Elias, Joshua E, Yeh, Ellen
Published in PLoS biology (13.09.2018)
Published in PLoS biology (13.09.2018)
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Journal Article
A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
Huttlin, Edward L., Jedrychowski, Mark P., Elias, Joshua E., Goswami, Tapasree, Rad, Ramin, Beausoleil, Sean A., Villén, Judit, Haas, Wilhelm, Sowa, Mathew E., Gygi, Steven P.
Published in Cell (23.12.2010)
Published in Cell (23.12.2010)
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Ribosomal protein RPL26 is the principal target of UFMylation
Walczak, Christopher P., Leto, Dara E., Zhang, Lichao, Riepe, Celeste, Muller, Ryan Y., DaRosa, Paul A., Ingolia, Nicholas T., Elias, Joshua E., Kopito, Ron R.
Published in Proceedings of the National Academy of Sciences - PNAS (22.01.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (22.01.2019)
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Journal Article
Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments
Shi, Handuo, Hu, Yan, Odermatt, Pascal D, Gonzalez, Carlos G, Zhang, Lichao, Elias, Joshua E, Chang, Fred, Huang, Kerwyn Casey
Published in Nature communications (30.03.2021)
Published in Nature communications (30.03.2021)
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Journal Article
An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease
Palanski, Brad A, Weng, Nielson, Zhang, Lichao, Hilmer, Andrew J, Fall, Lalla A, Swaminathan, Kavya, Jabri, Bana, Sousa, Carolina, Fernandez-Becker, Nielsen Q, Khosla, Chaitan, Elias, Joshua E
Published in Nature communications (16.02.2022)
Published in Nature communications (16.02.2022)
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Journal Article
Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin
Narayan, Rupa, Olsson, Niclas, Wagar, Lisa E, Medeiros, Bruno C, Meyer, Everett, Czerwinski, Debra, Khodadoust, Michael S, Zhang, Lichao, Schultz, Liora, Davis, Mark M, Elias, Joshua E, Levy, Ron
Published in PloS one (10.07.2019)
Published in PloS one (10.07.2019)
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Journal Article
Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation
Janas, Justyna A., Zhang, Lichao, Luu, Jacklyn H., Demeter, Janos, Meng, Lingjun, Marro, Samuele G., Mall, Moritz, Mooney, Nancie A., Schaukowitch, Katie, Ng, Yi Han, Yang, Nan, Huang, Yuhao, Neumayer, Gernot, Gozani, Or, Elias, Joshua E., Jackson, Peter K., Wernig, Marius
Published in Molecular cell (15.12.2022)
Published in Molecular cell (15.12.2022)
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Journal Article
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
Gygi, Steven P, Elias, Joshua E, Haas, Wilhelm, Faherty, Brendan K
Published in Nature methods (01.09.2005)
Published in Nature methods (01.09.2005)
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Journal Article
Identification of beta-secretase (BACE1) substrates using quantitative proteomics
Hemming, Matthew L, Elias, Joshua E, Gygi, Steven P, Selkoe, Dennis J
Published in PloS one (29.12.2009)
Published in PloS one (29.12.2009)
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Journal Article
Proteomic profiling of gamma-secretase substrates and mapping of substrate requirements
Hemming, Matthew L, Elias, Joshua E, Gygi, Steven P, Selkoe, Dennis J
Published in PLoS biology (01.10.2008)
Published in PLoS biology (01.10.2008)
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