Single-cell transcriptomic evidence for dense intracortical neuropeptide networks
Smith, Stephen J, Sümbül, Uygar, Graybuck, Lucas T, Collman, Forrest, Seshamani, Sharmishtaa, Gala, Rohan, Gliko, Olga, Elabbady, Leila, Miller, Jeremy A, Bakken, Trygve E, Rossier, Jean, Yao, Zizhen, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka, Hawrylycz, Michael
Published in eLife (11.11.2019)
Published in eLife (11.11.2019)
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Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity
Turner, Nicholas L., Macrina, Thomas, Bae, J. Alexander, Yang, Runzhe, Wilson, Alyssa M., Schneider-Mizell, Casey, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Bodor, Agnes L., Bleckert, Adam A., Brittain, Derrick, Froudarakis, Emmanouil, Dorkenwald, Sven, Collman, Forrest, Kemnitz, Nico, Ih, Dodam, Silversmith, William M., Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Yu, Szi-chieh, Popovych, Sergiy, Mu, Shang, Wong, William, Jordan, Chris S., Castro, Manuel, Buchanan, JoAnn, Bumbarger, Daniel J., Takeno, Marc, Torres, Russel, Mahalingam, Gayathri, Elabbady, Leila, Li, Yang, Cobos, Erick, Zhou, Pengcheng, Suckow, Shelby, Becker, Lynne, Paninski, Liam, Polleux, Franck, Reimer, Jacob, Tolias, Andreas S., Reid, R. Clay, da Costa, Nuno Maçarico, Seung, H. Sebastian
Published in Cell (17.03.2022)
Published in Cell (17.03.2022)
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Oligodendrocyte precursor cells ingest axons in the mouse neocortex
Buchanan, JoAnn, Elabbady, Leila, Collman, Forrest, Jorstad, Nikolas L, Bakken, Trygve E, Ott, Carolyn, Glatzer, Jenna, Bleckert, Adam A, Bodor, Agnes L, Brittain, Derrick, Bumbarger, Daniel J, Mahalingam, Gayathri, Seshamani, Sharmishtaa, Schneider-Mizell, Casey, Takeno, Marc M, Torres, Russel, Yin, Wenjing, Hodge, Rebecca D, Castro, Manuel, Dorkenwald, Sven, Ih, Dodam, Jordan, Chris S, Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Macrina, Thomas, Mu, Shang, Popovych, Sergiy, Silversmith, William M, Tartavull, Ignacio, Turner, Nicholas L, Wilson, Alyssa M, Wong, William, Wu, Jingpeng, Zlateski, Aleksandar, Zung, Jonathan, Lippincott-Schwartz, Jennifer, Lein, Ed S, Seung, H Sebastian, Bergles, Dwight E, Reid, R Clay, da Costa, Nuno Maçarico
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2022)
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Ultrastructural differences impact cilia shape and external exposure across cell classes in the visual cortex
Ott, Carolyn M., Torres, Russel, Kuan, Tung-Sheng, Kuan, Aaron, Buchanan, JoAnn, Elabbady, Leila, Seshamani, Sharmishtaa, Bodor, Agnes L., Collman, Forrest, Bock, Davi D., Lee, Wei Chung, da Costa, Nuno Maçarico, Lippincott-Schwartz, Jennifer
Published in Current biology (03.06.2024)
Published in Current biology (03.06.2024)
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Connectomic reconstruction of a female Drosophila ventral nerve cord
Azevedo, Anthony, Lesser, Ellen, Phelps, Jasper S., Mark, Brandon, Elabbady, Leila, Kuroda, Sumiya, Sustar, Anne, Moussa, Anthony, Khandelwal, Avinash, Dallmann, Chris J., Agrawal, Sweta, Lee, Su-Yee J., Pratt, Brandon, Cook, Andrew, Skutt-Kakaria, Kyobi, Gerhard, Stephan, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, Forrest, Schneider-Mizell, Casey, Brittain, Derrick, Jordan, Chris S., Dickinson, Michael, Pacureanu, Alexandra, Seung, H. Sebastian, Macrina, Thomas, Lee, Wei-Chung Allen, Tuthill, John C.
Published in Nature (London) (11.07.2024)
Published in Nature (London) (11.07.2024)
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Synaptic architecture of leg and wing premotor control networks in Drosophila
Lesser, Ellen, Azevedo, Anthony W., Phelps, Jasper S., Elabbady, Leila, Cook, Andrew, Syed, Durafshan Sakeena, Mark, Brandon, Kuroda, Sumiya, Sustar, Anne, Moussa, Anthony, Dallmann, Chris J., Agrawal, Sweta, Lee, Su-Yee J., Pratt, Brandon, Skutt-Kakaria, Kyobi, Gerhard, Stephan, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, Forrest, Schneider-Mizell, Casey, Brittain, Derrick, Jordan, Chris S., Macrina, Thomas, Dickinson, Michael, Lee, Wei-Chung Allen, Tuthill, John C.
Published in Nature (London) (11.07.2024)
Published in Nature (London) (11.07.2024)
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Multiscale and multimodal reconstruction of cortical structure and function
Turner, Nicholas L, Macrina, Thomas, Bae, J Alexander, Yang, Runzhe, Wilson, Alyssa M, Schneider-Mizell, Casey, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Bodor, Agnes L, Bleckert, Adam A, Brittain, Derrick, Froudarakis, Emmanouil, Dorkenwald, Sven, Collman, rest, Kemnitz, Nico, Ih, Dodam, Silversmith, William M, Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Yu, Szi-Chieh, Popovych, Sergiy, Shang Mu, Wong, William, Jordan, Chris S, Castro, Manuel, Buchanan, Joann, Bumbarger, Daniel J, Takeno, Marc, Torres, Russel, Mahalingam, Gayathri, Elabbady, Leila, Yang, Li, Cobos, Erick, Zhou, Pengcheng, Suckow, Shelby, Becker, Lynne, Paninski, Liam, Polleux, Franck, Reimer, Jacob, Tolias, Andreas S, Reid, R Clay, Nuno Maçarico Da Costa, Seung, H Sebastian
Published in bioRxiv (24.10.2020)
Published in bioRxiv (24.10.2020)
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Synaptic architecture of leg and wing premotor control networks in Drosophila
Lesser, Ellen, Azevedo, Anthony W, Phelps, Jasper S, Elabbady, Leila, Cook, Andrew, Sakeena Syed, Durafshan, Mark, Brandon, Kuroda, Sumiya, Sustar, Anne, Moussa, Anthony, Dallmann, Chris J, Agrawal, Sweta, Lee, Su-Yee J, Pratt, Brandon, Skutt-Kakaria, Kyobi, Gerhard, Stephan, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, Forrest, Schneider-Mizell, Casey, Brittain, Derrick, Jordan, Chris S, Macrina, Thomas, Dickinson, Michael, Lee, Wei-Chung Allen, Tuthill, John C
Published in bioRxiv (28.04.2024)
Published in bioRxiv (28.04.2024)
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Functional connectomics reveals general wiring rule in mouse visual cortex
Ding, Zhuokun, Fahey, Paul G, Papadopoulos, Stelios, Wang, Eric Y, Celii, Brendan, Papadopoulos, Christos, Chang, Andersen, Kunin, Alexander B, Tran, Dat, Fu, Jiakun, Ding, Zhiwei, Patel, Saumil, Ntanavara, Lydia, Froebe, Rachel, Ponder, Kayla, Muhammad, Taliah, Bae, J Alexander, Bodor, Agnes L, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J, Castro, Manuel A, Cobos, Erick, Dorkenwald, Sven, Elabbady, Leila, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Schneider-Mizell, Casey M, Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, Yatsenko, Dimitri, Froudarakis, Emmanouil, Sinz, Fabian, Josić, Krešimir, Rosenbaum, Robert, Seung, H Sebastian, Collman, Forrest, da Costa, Nuno Maçarico, Reid, R Clay, Walker, Edgar Y, Pitkow, Xaq, Reimer, Jacob, Tolias, Andreas S
Published in bioRxiv (14.10.2024)
Published in bioRxiv (14.10.2024)
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NEURD offers automated proofreading and feature extraction for connectomics
Celii, Brendan, Papadopoulos, Stelios, Ding, Zhuokun, Fahey, Paul G, Wang, Eric, Papadopoulos, Christos, Kunin, Alexander, Patel, Saumil, Bae, J Alexander, Bodor, Agnes L, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J, Castro, Manuel A, Cobos, Erick, Dorkenwald, Sven, Elabbady, Leila, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Schneider-Mizell, Casey M, Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yu, Szi-Chieh, Yin, Wenjing, Xenes, Daniel, Kitchell, Lindsey M, Rivlin, Patricia K, Rose, Victoria A, Bishop, Caitlyn A, Wester, Brock, Froudarakis, Emmanouil, Walker, Edgar Y, Sinz, Fabian H, Seung, H Sebastian, Collman, Forrest, da Costa, Nuno Maçarico, Reid, R Clay, Pitkow, Xaq, Tolias, Andreas S, Reimer, Jacob
Published in bioRxiv (23.09.2024)
Published in bioRxiv (23.09.2024)
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CAVE: Connectome Annotation Versioning Engine
Dorkenwald, Sven, Schneider-Mizell, Casey M, Brittain, Derrick, Halageri, Akhilesh, Jordan, Chris, Kemnitz, Nico, Castro, Manual A, Silversmith, William, Maitin-Shephard, Jeremy, Troidl, Jakob, Pfister, Hanspeter, Gillet, Valentin, Xenes, Daniel, Bae, J Alexander, Bodor, Agnes L, Buchanan, JoAnn, Bumbarger, Daniel J, Elabbady, Leila, Jia, Zhen, Kapner, Daniel, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, Reid, R Clay, da Costa, Nuno Maçarico, Seung, H Sebastian, Collman, Forrest
Published in bioRxiv (28.07.2023)
Published in bioRxiv (28.07.2023)
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Automated Neuron Shape Analysis from Electron Microscopy
Seshamani, Sharmishtaa, Elabbady, Leila, Schneider-Mizell, Casey, Mahalingam, Gayathri, Dorkenwald, Sven, Bodor, Agnes, Macrina, Thomas, Bumbarger, Daniel, Buchanan, JoAnn, Takeno, Marc, Yin, Wenjing, Brittain, Derrick, Torres, Russel, Kapner, Daniel, lee, Kisuk, Lu, Ran, Wu, Jinpeng, daCosta, Nuno, Reid, Clay, Collman, Forrest
Year of Publication 29.05.2020
Year of Publication 29.05.2020
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Nanometer-scale views of visual cortex reveal anatomical features of primary cilia poised to detect synaptic spillover
Ott, Carolyn M, Torres, Russel, Tung-Sheng Kuan, Kuan, Aaron T, Buchanan, Joann, Elabbady, Leila, Seshamani, Sharmishtaa, Bodor, Agnes L, Collman, rest C, Bock, Davi D, Wei-Chung, Allen Lee, Nuno Macarico Da Costa, Lippincott-Schwartz, Jennifer
Published in bioRxiv (06.11.2023)
Published in bioRxiv (06.11.2023)
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Perisomatic Features Enable Efficient and Dataset Wide Cell-Type Classifications Across Large-Scale Electron Microscopy Volumes
Elabbady, Leila, Seshamani, Sharmishtaa, Shang Mu, Mahalingam, Gayathri, Schneider-Mizell, Casey M, Bodor, Agnes, Bae, J Alexander, Brittain, Derrick, Buchanan, Joann, Bumbarger, Daniel J, Castro, Manuel A, Dorkenwald, Sven, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mitchell, Eric, Mondal, Shanka Subhra, Barak Nehoran, Popovych, Sergiy, Silversmith, William, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, The Microns Consortium, Seung, H Sebastian, Reid, R Clay, Nuno Macarico Da Costa, Collman, rest
Published in bioRxiv (13.01.2024)
Published in bioRxiv (13.01.2024)
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Tools for comprehensive reconstruction and analysis of Drosophila motor circuits
Azevedo, Anthony W, Lesser, Ellen, Brandon, Mark, Phelps, Jasper S, Elabbady, Leila, Kuroda, Sumiya, Sustar, Anne E, Moussa, Anthony J, Kandelwal, Avinash, Dallmann, Chris J, Agrawal, Sweta, Lee, Su-Yee J, Pratt, Brandon G, Cook, Andrew, Skutt-Kakari, Kyobi, Stephan, Gerhard, Lu, Ran, Kemnitz, Nico, Lee, Kisuk, Halageri, Akhilesh, Castro, Manuel, Ih, Dodam, Gager, Jay, Tammam, Marwan, Dorkenwald, Sven, Collman, rest C, Schneider-Mizell, Casey M, Brittain, Derrick, Jordan, Chris S, Dickinson, Michael H, Pacureanu, Alexandra, Seung, H Sebastian, Macrina, Thomas, Wei-Chung, Allen Lee, Tuthill, John C
Published in bioRxiv (15.12.2022)
Published in bioRxiv (15.12.2022)
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Large-scale unsupervised discovery of excitatory morphological cell types in mouse visual cortex
Weis, Marissa A, Papadopoulos, Stelios, Hansel, Laura, Lueddecke, Timo, Celii, Brendan, Fahey, Paul G, Bae, J Alexander, Bodor, Agnes L, Brittain, Derrick, Buchanan, Joann, Bumbarger, Daniel J, Castro, Manuel A, Cobos, Erick, Collman, rest, Da Costa, Nuno M, Dorkenwald, Sven, Elabbady, Leila, Froudarakis, Emmanouil, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kapner, Dan, Kemnitz, Nico, Kinn, Sam, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mahalingam, Gayathri, Mitchell, Eric, Mondal, Shanka S, Shang Mu, Barak Nehoran, Patel, Saumil, Pitkow, Xaq, Popovych, Sergiy, Reid, R Clay, Schneider-Mizell, Casey M, Seung, H Sebastian, Silversmith, William, Sinz, Fabian H, Takeno, Marc, Torres, Russel, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Yin, Wenjing, Yu, Szi-Chieh, Reimer, Jacob, Tolias, Andreas S, Ecker, Alexander S
Published in bioRxiv (22.12.2022)
Published in bioRxiv (22.12.2022)
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Automated Neuron Shape Analysis from Electron Microscopy
Seshamani, Sharmishtaa, Elabbady, Leila, Schneider-Mizell, Casey, Mahalingam, Gayathri, Dorkenwald, Sven, Bodor, Agnes, Macrina, Thomas, Bumbarger, Daniel, Buchanan, JoAnn, Takeno, Marc, Yin, Wenjing, Brittain, Derrick, Torres, Russel, Kapner, Daniel, lee, Kisuk, Lu, Ran, Wu, Jinpeng, daCosta, Nuno, Reid, Clay, Collman, rest
Published in arXiv.org (29.05.2020)
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Published in arXiv.org (29.05.2020)
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Single-Cell Transcriptomic Evidence for Dense Intracortical Neuropeptide Networks
Smith, Stephen J, Sumbul, Uygar, Graybuck, Lucas T, Collman, rest, Seshamani, Sharmishtaa, Gala, Rohan, Gliko, Olga, Elabbady, Leila, Miller, Jeremy, Bakken, Trygve, Rossier, Jean, Yao, Zizhen, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka, Hawrylycz, Michael
Published in bioRxiv (10.11.2019)
Published in bioRxiv (10.11.2019)
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Petascale neural circuit reconstruction: automated methods
Macrina, Thomas, Lee, Kisuk, Lu, Ran, Turner, Nicholas L, Wu, Jingpeng, Popovych, Sergiy, Silversmith, William William, Kemnitz, Nico, Bae, J Alexander, Castro, Manuel A, Dorkenwald, Sven, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Li, Kai, Mitchell, Eric, Mondal, Shanka Subhra, Shang Mu, Barak Nehoran, Wong, William, Yu, Szi-Chieh, Bodor, Agnes L, Brittain, Derrick, Buchanan, Joann, Bumbarger, Daniel J, Cobos, Erick, Collman, rest, Elabbady, Leila, Fahey, Paul G, Froudarakis, Emmanouil, Kapner, Daniel, Kinn, Sam, Mahalingam, Gayathri, Papadopoulos, Stelios, Patel, Saumil, Schneider-Mizell, Casey M, Sinz, Fabian H, Takeno, Marc, Torres, Russel, Yin, Wenjing, Pitkow, Xaq, Reimer, Jacob, Tolias, Andreas S, Reid, R Clay, Nuno Maçarico Da Costa, Seung, H Sebastian
Published in bioRxiv (05.08.2021)
Published in bioRxiv (05.08.2021)
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