Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
Naughton, Catherine, Avlonitis, Nicolaos, Corless, Samuel, Prendergast, James G, Mati, Ioulia K, Eijk, Paul P, Cockroft, Scott L, Bradley, Mark, Ylstra, Bauke, Gilbert, Nick
Published in Nature structural & molecular biology (01.03.2013)
Published in Nature structural & molecular biology (01.03.2013)
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Engineering large-scale chromosomal deletions by CRISPR-Cas9
Eleveld, Thomas F, Bakali, Chaimaa, Eijk, Paul P, Stathi, Phylicia, Vriend, Lianne E, Poddighe, Pino J, Ylstra, Bauke
Published in Nucleic acids research (02.12.2021)
Published in Nucleic acids research (02.12.2021)
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Journal Article
Clonality analysis of pulmonary tumors by genome-wide copy number profiling
Vincenten, Julien P L, van Essen, Hendrik F, Lissenberg-Witte, Birgit I, Bulkmans, Nicole W J, Krijgsman, Oscar, Sie, Daoud, Eijk, Paul P, Smit, Egbert F, Ylstra, Bauke, Thunnissen, Erik
Published in PloS one (16.10.2019)
Published in PloS one (16.10.2019)
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Journal Article
Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer
Neerincx, Maarten, Poel, Dennis, Sie, Daoud L S, van Grieken, Nicole C T, Shankaraiah, Ram C, van der Wolf-de Lijster, Floor S W, van Waesberghe, Jan-Hein T M, Burggraaf, Jan-Dirk, Eijk, Paul P, Verhoef, Cornelis, Ylstra, Bauke, Meijer, Gerrit A, van de Wiel, Mark A, Buffart, Tineke E, Verheul, Henk M W
Published in PloS one (03.08.2018)
Published in PloS one (03.08.2018)
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Journal Article
Correction: Clonality analysis of pulmonary tumors by genome-wide copy number profiling
Vincenten, Julien P L, van Essen, Hendrik F, Lissenberg-Witte, Birgit I, Bulkmans, Nicole W J, Krijgsman, Oscar, Sie, Daoud, Eijk, Paul P, Smit, Egbert F, Ylstra, Bauke, Thunnissen, Erik
Published in PloS one (19.11.2019)
Published in PloS one (19.11.2019)
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Journal Article
In vivo induction of resistance to gemcitabine results in increased expression of ribonucleotide reductase subunit M1 as the major determinant
BERGMAN, Andries M, EIJK, Paul P, RUIZ VAN HAPEREN, Veronique W. T, SMID, Kees, VEERMAN, Gijsbert, HUBEEK, Isabelle, VAN DEN IJSSEL, Paul, YLSTRA, Bauke, PETERS, Godefridus J
Published in Cancer research (Chicago, Ill.) (15.10.2005)
Published in Cancer research (Chicago, Ill.) (15.10.2005)
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Genomic Profiles Associated with Early Micrometastasis in Lung Cancer: Relevance of 4q Deletion
WRAGE, Michaela, RUOSAARI, Salla, GLATZEL, Markus, YLSTRA, Bauke, PANTEL, Klaus, WIKMAN, Harriet, EIJK, Paul P, KAIFI, Jussuf T, HOLLMEN, Jaakko, YEKEBAS, Emre F, IZBICKI, Jakob R, BRAKENHOFF, Ruud H, STREICHERT, Thomas, RIETHDORF, Sabine
Published in Clinical cancer research (01.03.2009)
Published in Clinical cancer research (01.03.2009)
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Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down
Costa, José L, Eijk, Paul P, van de Wiel, Mark A, ten Berge, Derk, Schmitt, Fernando, Narvaez, Carmen J, Welsh, JoEllen, Ylstra, Bauke
Published in BMC genomics (28.10.2009)
Published in BMC genomics (28.10.2009)
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Journal Article
DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly
Scheinin, Ilari, Sie, Daoud, Bengtsson, Henrik, van de Wiel, Mark A, Olshen, Adam B, van Thuijl, Hinke F, van Essen, Hendrik F, Eijk, Paul P, Rustenburg, François, Meijer, Gerrit A, Reijneveld, Jaap C, Wesseling, Pieter, Pinkel, Daniel, Albertson, Donna G, Ylstra, Bauke
Published in Genome research (01.12.2014)
Published in Genome research (01.12.2014)
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Microarray analysis reveals pivotal divergent mRNA expression profiles early in the development of either compensated ventricular hypertrophy or heart failure
Buermans, Henk P. J, Redout, Everaldo M, Schiel, Anja E, Musters, Rene J. P, Zuidwijk, Marian, Eijk, Paul P, van Hardeveld, Cornelis, Kasanmoentalib, Soemini, Visser, Frans C, Ylstra, Bauke, Simonides, Warner S
Published in Physiological genomics (11.05.2005)
Published in Physiological genomics (11.05.2005)
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Journal Article
Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping
de Vree, Paula J P, de Wit, Elzo, Yilmaz, Mehmet, van de Heijning, Monique, Klous, Petra, Verstegen, Marjon J A M, Wan, Yi, Teunissen, Hans, Krijger, Peter H L, Geeven, Geert, Eijk, Paul P, Sie, Daoud, Ylstra, Bauke, Hulsman, Lorette O M, van Dooren, Marieke F, van Zutven, Laura J C M, van den Ouweland, Ans, Verbeek, Sjef, van Dijk, Ko Willems, Cornelissen, Marion, Das, Atze T, Berkhout, Ben, Sikkema-Raddatz, Birgit, van den Berg, Eva, van der Vlies, Pieter, Weening, Desiree, den Dunnen, Johan T, Matusiak, Magdalena, Lamkanfi, Mohamed, Ligtenberg, Marjolijn J L, ter Brugge, Petra, Jonkers, Jos, Foekens, John A, Martens, John W, van der Luijt, Rob, van Amstel, Hans Kristian Ploos, van Min, Max, Splinter, Erik, de Laat, Wouter
Published in Nature biotechnology (01.10.2014)
Published in Nature biotechnology (01.10.2014)
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Accurate detection of copy number aberrations in FFPE samples using the mFAST-SeqS approach
Jary, Aude, Kim, Yongsoo, Rozemeijer, Kirsten, Eijk, Paul P., van der Zee, Ramon P., Bleeker, Maaike C.G., Wilting, Saskia M., Steenbergen, Renske D.M.
Published in Experimental and molecular pathology (01.06.2024)
Published in Experimental and molecular pathology (01.06.2024)
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Loss of Chromosome 18q11.2-q12.1 Is Predictive for Survival in Patients With Metastatic Colorectal Cancer Treated With Bevacizumab
van Dijk, Erik, Biesma, Hedde D, Cordes, Martijn, Smeets, Dominiek, Neerincx, Maarten, Das, Sudipto, Eijk, Paul P, Murphy, Verena, Barat, Anna, Bacon, Orna, Prehn, Jochen H M, Betge, Johannes, Gaiser, Timo, Fender, Bozena, Meijer, Gerrit A, McNamara, Deborah A, Klinger, Rut, Koopman, Miriam, Ebert, Matthias P A, Kay, Elaine W, Hennessey, Bryan T, Verheul, Henk M W, Gallagher, William M, O'Connor, Darran P, Punt, Cornelis J A, Loupakis, Fotios, Lambrechts, Diether, Byrne, Annette T, van Grieken, Nicole C T, Ylstra, Bauke
Published in Journal of clinical oncology (10.07.2018)
Published in Journal of clinical oncology (10.07.2018)
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Journal Article
PCR-Free Shallow Whole Genome Sequencing for Chromosomal Copy Number Detection from Plasma of Cancer Patients Is an Efficient Alternative to the Conventional PCR-Based Approach
Beagan, Jamie J., Drees, Esther E.E., Stathi, Phylicia, Eijk, Paul P., Meulenbroeks, Laura, Kessler, Floortje, Middeldorp, Jaap M., Pegtel, D. Michiel, Zijlstra, Josée M., Sie, Daoud, Heideman, Daniëlle A.M., Thunnissen, Erik, Smit, Linda, de Jong, Daphne, Mouliere, Florent, Ylstra, Bauke, Roemer, Margaretha G.M., van Dijk, Erik
Published in The Journal of molecular diagnostics : JMD (01.11.2021)
Published in The Journal of molecular diagnostics : JMD (01.11.2021)
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Journal Article
Expression of let-7i and miR-192 is associated with resistance to cisplatin-based chemoradiotherapy in patients with larynx and hypopharynx cancer
Poel, Dennis, Rustenburg, François, Sie, Daoud, van Essen, Hendrik F., Eijk, Paul P., Bloemena, Elisabeth, Elhorst Benites, Teresita, van den Berg, Madeleine C., Vergeer, Marije R., Leemans, René C., Buffart, Tineke E., Ylstra, Bauke, Brakenhoff, Ruud H., Verheul, Henk M., Voortman, Jens
Published in Oral oncology (01.10.2020)
Published in Oral oncology (01.10.2020)
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Journal Article
An exploration of pathways involved in lung carcinoid progression using gene expression profiling
Swarts, Dorian R A, Van Neste, Leander, Henfling, Mieke E R, Eijkenboom, Ivo, Eijk, Paul P, van Velthuysen, Marie-Louise, Vink, Aryan, Volante, Marco, Ylstra, Bauke, Van Criekinge, Wim, van Engeland, Manon, Ramaekers, Frans C S, Speel, Ernst-Jan M
Published in Carcinogenesis (New York) (01.12.2013)
Published in Carcinogenesis (New York) (01.12.2013)
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Circulating Tumor DNA as a Preoperative Marker of Recurrence in Patients with Peritoneal Metastases of Colorectal Cancer: A Clinical Feasibility Study
Beagan, Jamie J., Sluiter, Nina R., Bach, Sander, Eijk, Paul P., Vlek, Stijn L., Heideman, Daniëlle A. M., Kusters, Miranda, Pegtel, D. Michiel, Kazemier, Geert, van Grieken, Nicole C. T., Ylstra, Bauke, Tuynman, Jurriaan B.
Published in Journal of clinical medicine (04.06.2020)
Published in Journal of clinical medicine (04.06.2020)
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Journal Article
CGH arrays compared for DNA isolated from formalin-fixed, paraffin-embedded material
Krijgsman, Oscar, Israeli, Danielle, Haan, Josien C., van Essen, Hendrik F., Smeets, Serge J., Eijk, Paul P., M. Steenbergen, Renske D., Kok, Klaas, Tejpar, Sabine, Meijer, Gerrit A., Ylstra, Bauke
Published in Genes chromosomes & cancer (01.04.2012)
Published in Genes chromosomes & cancer (01.04.2012)
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Performance of amplicon-based next generation DNA sequencing for diagnostic gene mutation profiling in oncopathology
Sie, Daoud, Snijders, Peter J.F., Meijer, Gerrit A., Doeleman, Marije W., van Moorsel, Marinda I. H., van Essen, Hendrik F., Eijk, Paul P., Grünberg, Katrien, van Grieken, Nicole C. T., Thunnissen, Erik, Verheul, Henk M., Smit, Egbert F., Ylstra, Bauke, Heideman, Daniëlle A. M.
Published in Cellular oncology (Dordrecht) (01.10.2014)
Published in Cellular oncology (Dordrecht) (01.10.2014)
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Trifluorothymidine resistance is associated with decreased thymidine kinase and equilibrative nucleoside transporter expression or increased secretory phospholipase A2
Temmink, Olaf H, Bijnsdorp, Irene V, Prins, Henk-Jan, Losekoot, Nienke, Adema, Auke D, Smid, Kees, Honeywell, Richard J, Ylstra, Bauke, Eijk, Paul P, Fukushima, Masakazu, Peters, Godefridus J
Published in Molecular cancer therapeutics (01.04.2010)
Published in Molecular cancer therapeutics (01.04.2010)
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