A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms
Van der Roest, Bastiaan R, Bootsma, Martin C J, Fischer, Egil A J, Klinkenberg, Don, Kretzschmar, Mirjam E E
Published in PLoS computational biology (01.11.2023)
Published in PLoS computational biology (01.11.2023)
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Journal Article
Assessing the introduction risk of vector-borne animal diseases for the Netherlands using MINTRISK: A Model for INTegrated RISK assessment
de Vos, Clazien J, Hennen, Wil H G J, van Roermund, Herman J W, Dhollander, Sofie, Fischer, Egil A J, de Koeijer, Aline A
Published in PloS one (02.11.2021)
Published in PloS one (02.11.2021)
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Journal Article
Quantitative Risk Assessment for the Introduction of Carbapenem-Resistant Enterobacteriaceae (CPE) into Dutch Livestock Farms
Dankittipong, Natcha, Fischer, Egil A J, Swanenburg, Manon, Wagenaar, Jaap A, Stegeman, Arjan J, de Vos, Clazien J
Published in Antibiotics (Basel) (01.02.2022)
Published in Antibiotics (Basel) (01.02.2022)
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Journal Article
Host and Environmental Factors Affecting the Intestinal Microbiota in Chickens
Kers, Jannigje G, Velkers, Francisca C, Fischer, Egil A J, Hermes, Gerben D A, Stegeman, J A, Smidt, Hauke
Published in Frontiers in microbiology (16.02.2018)
Published in Frontiers in microbiology (16.02.2018)
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Journal Article
SARS‐CoV‐2 infection in cats and dogs in infected mink farms
Aart, Anna E., Velkers, Francisca C., Fischer, Egil A.J., Broens, Els M., Egberink, Herman, Zhao, Shan, Engelsma, Marc, Hakze‐van der Honing, Renate W., Harders, Frank, Rooij, Myrna M.T., Radstake, Carien, Meijer, Paola A., Oude Munnink, Bas B., Rond, Jan, Sikkema, Reina S., Spek, Arco N., Spierenburg, Marcel, Wolters, Wendy J., Molenaar, Robert‐Jan, Koopmans, Marion P.G., Poel, Wim H.M., Stegeman, Arjan, Smit, Lidwien A.M.
Published in Transboundary and emerging diseases (01.09.2022)
Published in Transboundary and emerging diseases (01.09.2022)
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Journal Article
Competitive Exclusion Prevents Colonization and Compartmentalization Reduces Transmission of ESBL-Producing Escherichia coli in Broilers
Dame-Korevaar, Anita, Kers, Jannigje G, van der Goot, Jeanet, Velkers, Francisca C, Ceccarelli, Daniela, Mevius, Dik J, Stegeman, Arjan, Fischer, Egil A J
Published in Frontiers in microbiology (10.11.2020)
Published in Frontiers in microbiology (10.11.2020)
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Journal Article
Competitive Exclusion Reduces Transmission and Excretion of Extended-Spectrum-β-Lactamase-Producing Escherichia coli in Broilers
Ceccarelli, Daniela, van Essen-Zandbergen, Alieda, Smid, Bregtje, Veldman, Kees T, Boender, Gert Jan, Fischer, Egil A J, Mevius, Dik J, van der Goot, Jeanet A
Published in Applied and environmental microbiology (01.06.2017)
Published in Applied and environmental microbiology (01.06.2017)
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Journal Article
Effect of challenge dose of plasmid-mediated extended-spectrum β-lactamase and AmpC β-lactamase producing Escherichia coli on time-until-colonization and level of excretion in young broilers
Dame-Korevaar, Anita, Fischer, Egil A.J., van der Goot, Jeanet, Velkers, Francisca, van den Broek, Jan, Veldman, Kees, Ceccarelli, Daniela, Mevius, Dik, Stegeman, Arjan
Published in Veterinary microbiology (01.12.2019)
Published in Veterinary microbiology (01.12.2019)
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Journal Article
Selection for amoxicillin-, doxycycline-, and enrofloxacin-resistant Escherichia coli at concentrations lower than the ECOFF in broiler-derived cecal fermentations
Swinkels, Aram F, Fischer, Egil A J, Korving, Lisa, Kusters, Nina E, Wagenaar, Jaap A, Zomer, Aldert L
Published in Microbiology spectrum (03.10.2024)
Published in Microbiology spectrum (03.10.2024)
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Journal Article
Flumequine, a fluoroquinolone in disguise
Swinkels, Aram F., Fischer, Egil A. J., Korving, Lisa, Christodoulou, Rafaella, Wagenaar, Jaap A., Zomer, Aldert L.
Published in NPJ ANTIMICROBIALS AND RESISTANCE (03.10.2024)
Published in NPJ ANTIMICROBIALS AND RESISTANCE (03.10.2024)
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Journal Article
Take care of the environment: housing conditions affect the interplay of nutritional interventions and intestinal microbiota in broiler chickens
Kers, Jannigje G, Velkers, Francisca C, Fischer, Egil A J, Hermes, Gerben D A, Lamot, David M, Stegeman, J Arjan, Smidt, Hauke
Published in Animal microbiome (27.08.2019)
Published in Animal microbiome (27.08.2019)
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Journal Article
Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study
Kers, Jannigje G., Oliveira, Jean E., Fischer, Egil A. J., Tersteeg‐Zijderveld, Monique H. G., Konstanti, Prokopis, Stegeman, Jan Arend (Arjan), Smidt, Hauke, Velkers, Francisca C.
Published in MicrobiologyOpen (Weinheim) (01.11.2020)
Published in MicrobiologyOpen (Weinheim) (01.11.2020)
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Journal Article
Contribution of cats and dogs to SARS-CoV-2 transmission in households
Fischer, Egil A J, Broens, Els M, Kooistra, Hans S, De Rooij, Myrna M T, Stegeman, Jan Arend, De Jong, Mart C M
Published in Frontiers in veterinary science (14.07.2023)
Published in Frontiers in veterinary science (14.07.2023)
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Journal Article
Comparison of Different Invasive and Non-Invasive Methods to Characterize Intestinal Microbiota throughout a Production Cycle of Broiler Chickens
Kers, Jannigje, Fischer, Egil, Stegeman, J., Smidt, Hauke, Velkers, Francisca
Published in Microorganisms (Basel) (10.10.2019)
Published in Microorganisms (Basel) (10.10.2019)
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Journal Article
Extended period of selection for antimicrobial resistance due to recirculation of persistent antimicrobials in broilers
Swinkels, Aram F, Berendsen, Bjorn J A, Fischer, Egil A J, Zomer, Aldert L, Wagenaar, Jaap A
Published in Journal of antimicrobial chemotherapy (02.07.2024)
Published in Journal of antimicrobial chemotherapy (02.07.2024)
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