5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation
Hon, Gary C., Song, Chun-Xiao, Du, Tingting, Jin, Fulai, Selvaraj, Siddarth, Lee, Ah Young, Yen, Chia-an, Ye, Zhen, Mao, Shi-Qing, Wang, Bang-An, Kuan, Samantha, Edsall, Lee E., Zhao, Boxuan Simen, Xu, Guo-Liang, He, Chuan, Ren, Bing
Published in Molecular cell (23.10.2014)
Published in Molecular cell (23.10.2014)
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A map of the cis-regulatory sequences in the mouse genome
Shen, Yin, Yue, Feng, McCleary, David F., Ye, Zhen, Edsall, Lee, Kuan, Samantha, Wagner, Ulrich, Dixon, Jesse, Lee, Leonard, Lobanenkov, Victor V., Ren, Bing
Published in Nature (London) (02.08.2012)
Published in Nature (London) (02.08.2012)
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Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
Hon, Gary C, Hawkins, R David, Caballero, Otavia L, Lo, Christine, Lister, Ryan, Pelizzola, Mattia, Valsesia, Armand, Ye, Zhen, Kuan, Samantha, Edsall, Lee E, Camargo, Anamaria Aranha, Stevenson, Brian J, Ecker, Joseph R, Bafna, Vineet, Strausberg, Robert L, Simpson, Andrew J, Ren, Bing
Published in Genome research (01.02.2012)
Published in Genome research (01.02.2012)
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Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
Xie, Wei, Schultz, Matthew D., Lister, Ryan, Hou, Zhonggang, Rajagopal, Nisha, Ray, Pradipta, Whitaker, John W., Tian, Shulan, Hawkins, R. David, Leung, Danny, Yang, Hongbo, Wang, Tao, Lee, Ah Young, Swanson, Scott A., Zhang, Jiuchun, Zhu, Yun, Kim, Audrey, Nery, Joseph R., Urich, Mark A., Kuan, Samantha, Yen, Chia-an, Klugman, Sarit, Yu, Pengzhi, Suknuntha, Kran, Propson, Nicholas E., Chen, Huaming, Edsall, Lee E., Wagner, Ulrich, Li, Yan, Ye, Zhen, Kulkarni, Ashwinikumar, Xuan, Zhenyu, Chung, Wen-Yu, Chi, Neil C., Antosiewicz-Bourget, Jessica E., Slukvin, Igor, Stewart, Ron, Zhang, Michael Q., Wang, Wei, Thomson, James A., Ecker, Joseph R., Ren, Bing
Published in Cell (23.05.2013)
Published in Cell (23.05.2013)
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Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells
Hawkins, R. David, Hon, Gary C., Lee, Leonard K., Ngo, QueMinh, Lister, Ryan, Pelizzola, Mattia, Edsall, Lee E., Kuan, Samantha, Luu, Ying, Klugman, Sarit, Antosiewicz-Bourget, Jessica, Ye, Zhen, Espinoza, Celso, Agarwahl, Saurabh, Shen, Li, Ruotti, Victor, Wang, Wei, Stewart, Ron, Thomson, James A., Ecker, Joseph R., Ren, Bing
Published in Cell stem cell (07.05.2010)
Published in Cell stem cell (07.05.2010)
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Integrative analysis of haplotype-resolved epigenomes across human tissues
Leung, Danny, Jung, Inkyung, Rajagopal, Nisha, Schmitt, Anthony, Selvaraj, Siddarth, Lee, Ah Young, Yen, Chia-An, Lin, Shin, Lin, Yiing, Qiu, Yunjiang, Xie, Wei, Yue, Feng, Hariharan, Manoj, Ray, Pradipta, Kuan, Samantha, Edsall, Lee, Yang, Hongbo, Chi, Neil C., Zhang, Michael Q., Ecker, Joseph R., Ren, Bing
Published in Nature (London) (19.02.2015)
Published in Nature (London) (19.02.2015)
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Epstein-Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci
Hong, Ted, Parameswaran, Sreeja, Donmez, Omer A, Miller, Daniel, Forney, Carmy, Lape, Michael, Saint Just Ribeiro, Mariana, Liang, Jun, Edsall, Lee E, Magnusen, Albert F, Miller, William, Chepelev, Iouri, Harley, John B, Zhao, Bo, Kottyan, Leah C, Weirauch, Matthew T
Published in Genome research (01.12.2021)
Published in Genome research (01.12.2021)
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Incomplete MyoD-induced transdifferentiation is associated with chromatin remodeling deficiencies
Manandhar, Dinesh, Song, Lingyun, Kabadi, Ami, Kwon, Jennifer B, Edsall, Lee E, Ehrlich, Melanie, Tsumagari, Koji, Gersbach, Charles A, Crawford, Gregory E, Gordân, Raluca
Published in Nucleic acids research (16.11.2017)
Published in Nucleic acids research (16.11.2017)
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Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome
Viel, Kenyatta C M F, Parameswaran, Sreeja, Donmez, Omer A, Forney, Carmy R, Hass, Matthew R, Yin, Cailing, Jones, Sydney H, Prosser, Hayley K, Diouf, Arame A, Gittens, Olivia E, Edsall, Lee E, Chen, Xiaoting, Rowden, Hope, Dunn, Katelyn A, Guo, Rui, VonHandorf, Andrew, Leong, Merrin Man Long, Ernst, Kevin, Kaufman, Kenneth M, Lawson, Lucinda P, Gewurz, Ben, Zhao, Bo, Kottyan, Leah C, Weirauch, Matthew T
Published in BMC genomics (12.03.2024)
Published in BMC genomics (12.03.2024)
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Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers
Felton, Jennifer M., Vallabh, Sushmitha, Parameswaran, Sreeja, Edsall, Lee E., Ernst, Kevin, Wronowski, Benjamin, Malik, Astha, Kotliar, Michael, Weirauch, Matthew T., Barski, Artem, Fulkerson, Patricia C., Rothenberg, Marc E.
Published in The Journal of immunology (1950) (15.08.2021)
Published in The Journal of immunology (1950) (15.08.2021)
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Epigenetic and transcriptional dysregulation in CD4+ T cells in patients with atopic dermatitis
Eapen, Amy A, Parameswaran, Sreeja, Forney, Carmy, Edsall, Lee E, Miller, Daniel, Donmez, Omer, Dunn, Katelyn, Lu, Xiaoming, Granitto, Marissa, Rowden, Hope, Magier, Adam Z, Pujato, Mario, Chen, Xiaoting, Kaufman, Kenneth, Bernstein, David I, Devonshire, Ashley L, Rothenberg, Marc E, Weirauch, Matthew T, Kottyan, Leah C
Published in PLoS genetics (16.05.2022)
Published in PLoS genetics (16.05.2022)
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DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions
Chen, Yongheng, Chen, Chunxia, Zhang, Zhe, Liu, Chun-Chi, Johnson, Matthew E, Espinoza, Celso A, Edsall, Lee E, Ren, Bing, Zhou, Xianghong Jasmine, Grant, Struan F A, Wells, Andrew D, Chen, Lin
Published in Nucleic acids research (07.01.2015)
Published in Nucleic acids research (07.01.2015)
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Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency
Hawkins, R David, Hon, Gary C, Yang, Chuhu, Antosiewicz-Bourget, Jessica E, Lee, Leonard K, Ngo, Que-Minh, Klugman, Sarit, Ching, Keith A, Edsall, Lee E, Ye, Zhen, Kuan, Samantha, Yu, Pengzhi, Liu, Hui, Zhang, Xinmin, Green, Roland D, Lobanenkov, Victor V, Stewart, Ron, Thomson, James A, Ren, Bing
Published in Cell research (01.10.2011)
Published in Cell research (01.10.2011)
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Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach
Edsall, Lee E, Berrio, Alejandro, Majoros, William H, Swain-Lenz, Devjanee, Morrow, Shauna, Shibata, Yoichiro, Safi, Alexias, Wray, Gregory A, Crawford, Gregory E, Allen, Andrew S
Published in Genome biology and evolution (01.10.2019)
Published in Genome biology and evolution (01.10.2019)
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Exome analysis identified a novel mutation in the RBP4 gene in a consanguineous pedigree with retinal dystrophy and developmental abnormalities
Cukras, Catherine, Gaasterland, Terry, Lee, Pauline, Gudiseva, Harini V, Chavali, Venkata R M, Pullakhandam, Raghu, Maranhao, Bruno, Edsall, Lee, Soares, Sandra, Reddy, G Bhanuprakash, Sieving, Paul A, Ayyagari, Radha
Published in PloS one (26.11.2012)
Published in PloS one (26.11.2012)
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Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes
Macagno, Eduardo R, Gaasterland, Terry, Edsall, Lee, Bafna, Vineet, Soares, Marcelo B, Scheetz, Todd, Casavant, Thomas, Da Silva, Corinne, Wincker, Patrick, Tasiemski, Aurélie, Salzet, Michel
Published in BMC genomics (25.06.2010)
Published in BMC genomics (25.06.2010)
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DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions
Chen, Yongheng, Chen, Chunxia, Zhang, Zhe, Liu, Chun-Chi, Johnson, Matthew E., Espinoza, Celso A., Edsall, Lee E., Ren, Bing, Zhou, Xianghong Jasmine, Grant, Struan F.A., Wells, Andrew D., Chen, Lin
Published in Nucleic acids research (30.01.2015)
Published in Nucleic acids research (30.01.2015)
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Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis
Shook, Molly S., Lu, Xiaoming, Chen, Xiaoting, Parameswaran, Sreeja, Edsall, Lee, Trimarchi, Michael P., Ernst, Kevin, Granitto, Marissa, Forney, Carmy, Donmez, Omer A., Diouf, Arame A., VonHandorf, Andrew, Rothenberg, Marc E., Weirauch, Matthew T., Kottyan, Leah C.
Published in American journal of human genetics (01.02.2024)
Published in American journal of human genetics (01.02.2024)
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Journal Article
Epigenetic and Transcriptional Dysregulation in T cells of Patients with Atopic Dermatitis
Eapen, Amy, Kottyan, Leah, Parameswaran, Sreeja, Forney, Carmy, Edsall, Lee, Miller, Daniel, Donmez, Omer, Weirauch, Matthew, Dunn, Katelyn, Lu, Xiaoming, Granitto, Marissa, Rowden, Hope, Magier, Adam, Pujato, Mario, Chen, Xiaoting, Bernstein, David, Devonshire, Ashley, Rothenberg, Marc
Published in Journal of allergy and clinical immunology (01.02.2022)
Published in Journal of allergy and clinical immunology (01.02.2022)
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Epigenetic analysis of the murine chromatin landscape identifies a repertoire of eosinophil-specific PU.1-bound enhancers
Felton, Jennifer M., Vallabh, Sushmitha, Parameswaran, Sreeja, Edsall, Lee E., Ernst, Kevin, Wronowski, Benjamin, Malik, Astha, Kotliar, Michael, Weirauch, Matthew T., Barski, Artem, Fulkerson, Patricia C., Rothenberg, Marc E.
Published in The Journal of immunology (1950) (30.07.2021)
Published in The Journal of immunology (1950) (30.07.2021)
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