Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states
Chandrasekaran, Sriram, Ament, Seth A., Eddy, James A., Rodriguez-Zas, Sandra L., Schatz, Bruce R., Price, Nathan D., Robinson, Gene E.
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2011)
Get full text
Journal Article
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
Lee, Jong Min, Min Lee, Jong, Gianchandani, Erwin P, Eddy, James A, Papin, Jason A
Published in PLoS computational biology (23.05.2008)
Published in PLoS computational biology (23.05.2008)
Get full text
Journal Article
Human whole genome genotype and transcriptome data for Alzheimer’s and other neurodegenerative diseases
Allen, Mariet, Carrasquillo, Minerva M., Funk, Cory, Heavner, Benjamin D., Zou, Fanggeng, Younkin, Curtis S., Burgess, Jeremy D., Chai, High-Seng, Crook, Julia, Eddy, James A., Li, Hongdong, Logsdon, Ben, Peters, Mette A., Dang, Kristen K., Wang, Xue, Serie, Daniel, Wang, Chen, Nguyen, Thuy, Lincoln, Sarah, Malphrus, Kimberly, Bisceglio, Gina, Li, Ma, Golde, Todd E., Mangravite, Lara M., Asmann, Yan, Price, Nathan D., Petersen, Ronald C., Graff-Radford, Neill R., Dickson, Dennis W., Younkin, Steven G., Ertekin-Taner, Nilüfer
Published in Scientific data (11.10.2016)
Published in Scientific data (11.10.2016)
Get full text
Journal Article
IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior
Chakrabarty, Paramita, Li, Andrew, Ceballos-Diaz, Carolina, Eddy, James A., Funk, Cory C., Moore, Brenda, DiNunno, Nadia, Rosario, Awilda M., Cruz, Pedro E., Verbeeck, Christophe, Sacino, Amanda, Nix, Sarah, Janus, Christopher, Price, Nathan D., Das, Pritam, Golde, Todd E.
Published in Neuron (Cambridge, Mass.) (04.02.2015)
Published in Neuron (Cambridge, Mass.) (04.02.2015)
Get full text
Journal Article
Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain
Ko, Younhee, Ament, Seth A., Eddy, James A., Caballero, Juan, Earls, John C., Hood, Leroy, Price, Nathan D.
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2013)
Get full text
Journal Article
Relative Expression Analysis for Molecular Cancer Diagnosis and Prognosis
Eddy, James A., Sung, Jaeyun, Geman, Donald, Price, Nathan D.
Published in Technology in cancer research & treatment (01.04.2010)
Published in Technology in cancer research & treatment (01.04.2010)
Get full text
Journal Article
CRI iAtlas: an interactive portal for immuno-oncology research [version 1; peer review: 3 approved]
Eddy, James A, Thorsson, Vésteinn, Lamb, Andrew E, Gibbs, David L, Heimann, Carolina, Yu, Jia Xin, Chung, Verena, Chae, Yooree, Dang, Kristen, Vincent, Benjamin G, Shmulevich, Ilya, Guinney, Justin
Published in F1000 research (2020)
Published in F1000 research (2020)
Get full text
Journal Article
Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC)
Eddy, James A, Hood, Leroy, Price, Nathan D, Geman, Donald
Published in PLoS computational biology (01.05.2010)
Published in PLoS computational biology (01.05.2010)
Get full text
Journal Article
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052
Milne, Caroline B, Eddy, James A, Raju, Ravali, Ardekani, Soroush, Kim, Pan-Jun, Senger, Ryan S, Jin, Yong-Su, Blaschek, Hans P, Price, Nathan D
Published in BMC systems biology (16.08.2011)
Published in BMC systems biology (16.08.2011)
Get full text
Journal Article
Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology
Milne, Caroline B, Kim, Pan-Jun, Eddy, James A, Price, Nathan D
Published in Biotechnology journal (01.12.2009)
Published in Biotechnology journal (01.12.2009)
Get more information
Journal Article
Integrated Proteomics and Genomics Analysis Reveals a Novel Mesenchymal to Epithelial Reverting Transition in Leiomyosarcoma through Regulation of Slug
Yang, Jilong, Eddy, James A., Pan, Yuan, Hategan, Andrea, Tabus, Ioan, Wang, Yingmei, Cogdell, David, Price, Nathan D., Pollock, Raphael E., Lazar, Alexander J.F., Hunt, Kelly K., Trent, Jonathan C., Zhang, Wei
Published in Molecular & cellular proteomics (01.11.2010)
Published in Molecular & cellular proteomics (01.11.2010)
Get full text
Journal Article
Single-Cell RNA Sequencing Reveals Expanded Clones of Islet Antigen-Reactive CD4 + T Cells in Peripheral Blood of Subjects with Type 1 Diabetes
Cerosaletti, Karen, Barahmand-Pour-Whitman, Fariba, Yang, Junbao, DeBerg, Hannah A, Dufort, Matthew J, Murray, Sara A, Israelsson, Elisabeth, Speake, Cate, Gersuk, Vivian H, Eddy, James A, Reijonen, Helena, Greenbaum, Carla J, Kwok, William W, Wambre, Erik, Prlic, Martin, Gottardo, Raphael, Nepom, Gerald T, Linsley, Peter S
Published in The Journal of immunology (1950) (01.07.2017)
Published in The Journal of immunology (1950) (01.07.2017)
Get full text
Journal Article
Best practices to evaluate the impact of biomedical research software—metric collection beyond citations
Afiaz, Awan, Ivanov, Andrey A, Chamberlin, John, Hanauer, David, Savonen, Candace L, Goldman, Mary J, Morgan, Martin, Reich, Michael, Getka, Alexander, Holmes, Aaron, Pati, Sarthak, Knight, Dan, Boutros, Paul C, Bakas, Spyridon, Caporaso, J Gregory, Del Fiol, Guilherme, Hochheiser, Harry, Haas, Brian, Schloss, Patrick D, Eddy, James A, Albrecht, Jake, Fedorov, Andrey, Waldron, Levi, Hoffman, Ava M, Bradshaw, Richard L, Leek, Jeffrey T, Wright, Carrie
Published in Bioinformatics (Oxford, England) (02.08.2024)
Published in Bioinformatics (Oxford, England) (02.08.2024)
Get full text
Journal Article
In silico models of cancer
Edelman, Lucas B, Eddy, James A, Price, Nathan D
Published in Wiley interdisciplinary reviews. Systems biology and medicine (01.07.2010)
Published in Wiley interdisciplinary reviews. Systems biology and medicine (01.07.2010)
Get more information
Journal Article
Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
Clayton, Ashley, DeFelice, Mialy, Zalmanek, Brynn, Hodgson, Jay, Morin, Caroline, Simon, Stockard, Bletz, Julie A, Eddy, James A, Nikolov, Milen, Banerjee, Jineta, Vinnakota, Kalyan, Marasca, Marco, Boske, Kevin J, Hoff, Bruce, Bradic, Ljubomir, Kim, YooRi, Goss, James R, Allaway, Robert J
Published in Database : the journal of biological databases and curation (23.06.2022)
Published in Database : the journal of biological databases and curation (23.06.2022)
Get full text
Journal Article